allydunham / aa_subtypesLinks
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
☆11Updated 3 years ago
Alternatives and similar repositories for aa_subtypes
Users that are interested in aa_subtypes are comparing it to the libraries listed below
Sorting:
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- A platform to do RNA science☆27Updated 4 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- PDBe Programming Interfaces information☆14Updated 7 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- ☆32Updated last month
- ☆11Updated 4 years ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year
- Visually explore covariation in protein families☆39Updated 5 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Non-sequential structural alignment program for protein structure☆19Updated last year
- Fast and accurate protein structure prediction☆55Updated 9 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 5 months ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆35Updated 3 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆30Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- ☆20Updated 4 years ago
- Contact Prediction ToolKit☆21Updated 2 months ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Updated 2 years ago
- a collection of colabs useful for molecular biology☆31Updated last year
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆29Updated last year
- ☆12Updated 2 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 4 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Reference-free analysis of genetic architecture☆18Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated last month