Alternatives and similar repositories for aa_subtypes

Users that are interested in aa_subtypes are comparing it to the libraries listed below

• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆40Updated 6 years ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆36Updated 2 years ago
• ramithuh / diff-evol-tree-search
  We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…
  ☆20Updated 2 years ago
• sokrypton / seqsal
  ☆11Updated 4 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆57Updated last year
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• sokrypton / seqmodels
  ☆32Updated 4 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆35Updated 3 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• PDBeurope / PDBe_Programming
  PDBe Programming Interfaces information
  ☆14Updated 7 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆30Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 4 months ago
• modernatx / therapeutic_enzyme_engineering_with_generative_neural_networks
  ☆12Updated 2 years ago
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated last year
• sbl-sdsc / mmtf-proteomics
  Methods for mapping proteomics data on 3D protein structure.
  ☆15Updated 6 years ago
• aqlaboratory / pnerf
  ☆36Updated 6 years ago
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆17Updated 3 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆33Updated 2 years ago
• DagmarIlz / SETH
  ProtT5 (Transformer) embeddings used for residue wise disorder prediction in proteins
  ☆11Updated last year
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆56Updated 6 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago