Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
☆10Jun 11, 2022Updated 4 years ago
Alternatives and similar repositories for aa_subtypes
Users that are interested in aa_subtypes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Source code for SimBac, a bacterial genome simulator☆14Sep 20, 2024Updated last year
- Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.☆21Feb 1, 2019Updated 7 years ago
- ☆16Dec 7, 2020Updated 5 years ago
- Structural Bioinformatics Training Workshop & Hackathon 2017☆19Jan 23, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inference of couplings in proteins and RNAs from sequence variation☆124Jan 21, 2023Updated 3 years ago
- ☆12Dec 12, 2018Updated 7 years ago
- Python based scripts for D3R grand challenge 2 analysis☆16Apr 25, 2017Updated 9 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24May 29, 2026Updated last month
- Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)☆14Jul 29, 2017Updated 8 years ago
- Automated Variational Inference for Gaussian Process Models☆14Aug 18, 2015Updated 10 years ago
- The java implementation of the MMTF API, decoder and encoder.☆12Dec 19, 2025Updated 7 months ago
- phylobayes mpi☆28Feb 3, 2023Updated 3 years ago
- Benchmarking common tasks on proteins in various languages and packages☆42Dec 27, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- Methods for mapping proteomics data on 3D protein structure.☆15Jan 18, 2020Updated 6 years ago
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated 3 weeks ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆18Apr 12, 2021Updated 5 years ago
- Code for the in-dev PrediXcan Project☆28Oct 17, 2022Updated 3 years ago
- The Expanded Package for IET Solvation☆13Feb 6, 2025Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- ☆11Oct 28, 2022Updated 3 years ago
- ☆11Sep 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SAGA-based Pilot-Job Implementation for Compute and Data☆19Mar 14, 2026Updated 4 months ago
- ☆10Jun 24, 2023Updated 3 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- Deep ResNet-based protein contact prediction☆19Mar 30, 2020Updated 6 years ago
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆15Jan 21, 2026Updated 6 months ago
- Code available for the quantitative pharmacophores☆13Sep 7, 2022Updated 3 years ago
- A generative latent variable model for biological sequence families.☆256Mar 15, 2022Updated 4 years ago
- A new python package to visualize molecules in dots hover☆13Feb 15, 2024Updated 2 years ago
- Alignment-free 3D molecular shape descriptors based on spectral and diffusion geometry. Provides tools for computing Laplace-Beltrami spe…☆11Jan 21, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆38Feb 17, 2022Updated 4 years ago
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- ☆13Jul 5, 2024Updated 2 years ago
- ☆12Jun 14, 2022Updated 4 years ago
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago