Alternatives and similar repositories for aa_subtypes:

Users that are interested in aa_subtypes are comparing it to the libraries listed below

• ramithuh / diff-evol-tree-search
  We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…
  ☆20Updated last year
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 6 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• sokrypton / seqsal
  ☆11Updated 4 years ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 2 years ago
• jurgjn / af-protein-universe
  ☆24Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆18Updated last month
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆52Updated 3 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆26Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• gjoni / map_align
  Contact map alignment
  ☆16Updated 6 years ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• sokrypton / seqmodels
  ☆31Updated 4 years ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆34Updated 7 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 2 years ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆24Updated 2 months ago
• soedinglab / CCMgen
  ☆20Updated 3 years ago
• ahaldane / Mi3-GPU
  ☆18Updated 2 months ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 3 months ago
• soedinglab / uniclust-pipeline
  ☆38Updated 7 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• KULL-Centre / pdbwords
  Printing text using protein structures
  ☆13Updated 3 years ago
• debbiemarkslab / EVzoom
  Visually explore covariation in protein families
  ☆37Updated 5 years ago
• carlobaldassi / GaussDCA.jl
  Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
  ☆22Updated 3 years ago