allydunham / aa_subtypesLinks
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
☆11Updated 2 years ago
Alternatives and similar repositories for aa_subtypes
Users that are interested in aa_subtypes are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year
- A platform to do RNA science☆27Updated 4 years ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- EvoEF + evolutionary profile for ddG_bind prediction☆13Updated 2 years ago
- ☆20Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- ☆25Updated last year
- ☆25Updated last year
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆34Updated 3 years ago
- ☆31Updated 4 years ago
- Non-sequential structural alignment program for protein structure☆19Updated 7 months ago
- a collection of colabs useful for molecular biology☆30Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆27Updated 9 months ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 3 weeks ago
- GraphPart, a data partitioning method for ML on biological sequences☆27Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- Fast and accurate protein structure prediction☆52Updated 4 months ago
- Printing text using protein structures☆13Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆42Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- Visually explore covariation in protein families☆38Updated 5 years ago