alipirani88 / snpkit
Modular workflow for Microbial Variant Calling and SNP diagnostics.
☆6Updated 11 months ago
Alternatives and similar repositories for snpkit
Users that are interested in snpkit are comparing it to the libraries listed below
Sorting:
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆21Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Teaching modules for Human Genome Variation Lab.☆20Updated 9 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated 2 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- ☆19Updated last year
- ☆27Updated 3 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 8 months ago
- ☆24Updated 3 weeks ago
- transposable element typing pipeline☆18Updated last year
- A pipeline creation tool using Snakemake☆11Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 10 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Evolutionary Transcriptomics with R☆43Updated last week
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Transfer coordinates across genomes☆23Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆11Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 6 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 3 years ago
- ☆20Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 9 months ago