☆15Oct 28, 2020Updated 5 years ago
Alternatives and similar repositories for bert-fold
Users that are interested in bert-fold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Aug 5, 2022Updated 3 years ago
- ☆21Jul 16, 2020Updated 6 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated last year
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- Singularity recipe for AlphaFold☆37Nov 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated 2 years ago
- ☆15Nov 13, 2023Updated 2 years ago
- [deprecated] 🧬 Python API to fetch gnomAD data☆23Dec 9, 2021Updated 4 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- ☆18Nov 18, 2025Updated 8 months ago
- Building a DCA Frustratometer from scratch. Ultimately we aim to compare frustrated sites according to the DCA and AWSEM Frustratometers.☆15Jan 8, 2026Updated 6 months ago
- Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org☆10Mar 1, 2023Updated 3 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- (Idea stage) Open-source platform for virtual&hybrid conferencing☆13Jul 3, 2020Updated 6 years ago
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 4 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37May 19, 2022Updated 4 years ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- ☆39Aug 31, 2021Updated 4 years ago
- The Expanded Package for IET Solvation☆13Feb 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Variational Autoencoder (VAE)-like neural network to solve ideal MHD equilibrium in a tokamak☆11May 20, 2022Updated 4 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Python tool to run docker containers in sequence, for reproducible computational analysis pipelines☆11Oct 23, 2015Updated 10 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- ☆51Mar 30, 2026Updated 3 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆59Mar 24, 2021Updated 5 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 months ago
- ☆11Oct 28, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from …☆43May 3, 2024Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- ☆12Jun 16, 2023Updated 3 years ago
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 3 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago