☆15Oct 28, 2020Updated 5 years ago
Alternatives and similar repositories for bert-fold
Users that are interested in bert-fold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jul 16, 2020Updated 5 years ago
- Singularity recipe for AlphaFold☆36Nov 12, 2024Updated last year
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated last year
- ☆15Nov 13, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Script to parse a mysql dump and generate CSVs for all of the tables in the dump☆21Apr 18, 2019Updated 7 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated last year
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 6 years ago
- ☆18Nov 18, 2025Updated 6 months ago
- [deprecated] 🧬 Python API to fetch gnomAD data☆23Dec 9, 2021Updated 4 years ago
- Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org☆10Mar 1, 2023Updated 3 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated last year
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- (Idea stage) Open-source platform for virtual&hybrid conferencing☆13Jul 3, 2020Updated 5 years ago
- ☆12Jun 26, 2020Updated 5 years ago
- ☆11Jan 3, 2024Updated 2 years ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 3 years ago
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 4 years ago
- My thesis project☆10Jun 7, 2021Updated 4 years ago
- R2Plus1D MXNet Implementation☆11Jul 11, 2018Updated 7 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37May 19, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transport code for plasma simulations☆12Mar 27, 2026Updated 2 months ago
- This is the Pytorch implementation of paper--Training deep neural-networks using a noise adaptation layer.☆10Apr 18, 2021Updated 5 years ago
- Open source code combining implementations of Upside Down Reinforcement Learning and Reward Conditioned Policies☆20Mar 10, 2021Updated 5 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- Python tool to run docker containers in sequence, for reproducible computational analysis pipelines☆11Oct 23, 2015Updated 10 years ago
- Genetic Algorithm for integer constrained optimization and its applications☆11Oct 5, 2023Updated 2 years ago
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- Code for running BinderFlow☆66Nov 21, 2025Updated 6 months ago
- Variational Autoencoder (VAE)-like neural network to solve ideal MHD equilibrium in a tokamak☆11May 20, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆40Aug 31, 2021Updated 4 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 4 years ago
- The code enables to perform Bayesian inference in an efficient manner through the use of Hamiltonian Neural Networks (HNNs), Deep Neural …☆17Jan 14, 2023Updated 3 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 10 months ago
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 3 years ago
- A plugin from ECMWF/ai-models, with models sourced from PuYun Meteorological Model in Metacarbon (Hangzhou)☆20Sep 30, 2025Updated 7 months ago