☆15Oct 28, 2020Updated 5 years ago
Alternatives and similar repositories for bert-fold
Users that are interested in bert-fold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Aug 5, 2022Updated 4 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- Singularity recipe for AlphaFold☆37Nov 12, 2024Updated last year
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Nov 13, 2023Updated 2 years ago
- ☆19Nov 18, 2025Updated 10 months ago
- Building a DCA Frustratometer from scratch. Ultimately we aim to compare frustrated sites according to the DCA and AWSEM Frustratometers.☆16Jan 8, 2026Updated 8 months ago
- Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org☆10Mar 1, 2023Updated 3 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- (Idea stage) Open-source platform for virtual&hybrid conferencing☆13Jul 3, 2020Updated 6 years ago
- Genetic Algorithm for integer constrained optimization and its applications☆11Oct 5, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jan 3, 2024Updated 2 years ago
- Supporting codes for the numerical implementations in the paper "Operator inference for non-intrusive model reduction with quadratic mani…☆12Aug 18, 2022Updated 4 years ago
- My thesis project☆10Jun 7, 2021Updated 5 years ago
- Supplementary data for the ACME algorithm☆24Oct 2, 2022Updated 3 years ago
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 5 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 5 years ago
- Transport code for plasma simulations☆12Mar 27, 2026Updated 6 months ago
- This is the Pytorch implementation of paper--Training deep neural-networks using a noise adaptation layer.☆10Apr 18, 2021Updated 5 years ago
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆27Apr 25, 2019Updated 7 years ago
- Open source code combining implementations of Upside Down Reinforcement Learning and Reward Conditioned Policies☆19Mar 10, 2021Updated 5 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37May 19, 2022Updated 4 years ago
- Supporting material for Princeton ORF522☆15Aug 27, 2025Updated last year
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- ☆40Aug 31, 2021Updated 5 years ago
- The Expanded Package for IET Solvation☆14Feb 6, 2025Updated last year
- Graph Learning of INTER-protein contacts☆11Feb 20, 2022Updated 4 years ago
- Variational Autoencoder (VAE)-like neural network to solve ideal MHD equilibrium in a tokamak☆11May 20, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python tool to run docker containers in sequence, for reproducible computational analysis pipelines☆11Oct 23, 2015Updated 10 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- ☆52Mar 30, 2026Updated 5 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆58Mar 24, 2021Updated 5 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 5 months ago
- ☆11Oct 28, 2022Updated 3 years ago