aicb-ZhangLabs / deepveloLinks
☆8Updated 2 years ago
Alternatives and similar repositories for deepvelo
Users that are interested in deepvelo are comparing it to the libraries listed below
Sorting:
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆8Updated 4 years ago
- ☆45Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆54Updated 3 weeks ago
- ☆123Updated 3 years ago
- ☆53Updated 9 months ago
- R implementation of GeneTrajectory☆60Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆109Updated 9 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆51Updated last year
- inferring regulatory cellular dynamics☆48Updated this week
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq☆16Updated 3 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆12Updated 11 months ago
- ☆17Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆78Updated 4 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 8 months ago
- Cell cycle inference in single-cell RNA-seq☆46Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆75Updated 2 months ago
- Construct Tumor Transition Zone Microenvironment☆46Updated 3 weeks ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- ☆118Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆39Updated 3 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆69Updated 9 months ago
- ☆10Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 10 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆69Updated last week