Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infectious Diseases, 2020
☆71Dec 18, 2022Updated 3 years ago
Alternatives and similar repositories for 2020-ncov
Users that are interested in 2020-ncov are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆22Jul 18, 2020Updated 6 years ago
- Inference for State Space Models like playing with duplo blocks☆25May 9, 2017Updated 9 years ago
- A cookbook of epidemiological models☆14Mar 1, 2019Updated 7 years ago
- https://epidemiology-stan.github.io/☆10Mar 12, 2022Updated 4 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆29Feb 3, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Simulate infectious disease transmission with contact tracing☆18Oct 5, 2026Updated 3 weeks ago
- R Package for individual based epidemiological models☆35Jun 8, 2026Updated 4 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- An R package for analyzing censored and under-reported surveillance data.☆10Apr 11, 2025Updated last year
- Derive social mixing matrices from survey data.☆44Sep 28, 2026Updated last month
- Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools☆56Mar 2, 2020Updated 6 years ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆13Jul 13, 2023Updated 3 years ago
- ☆27Feb 25, 2021Updated 5 years ago
- An R package for Bayes Linear emulation and history matching.☆20Aug 11, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Jul 11, 2019Updated 7 years ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆22Apr 26, 2022Updated 4 years ago
- ☆89May 19, 2020Updated 6 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆17May 15, 2025Updated last year
- Infectious disease model library and utilities☆16Sep 2, 2022Updated 4 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Jul 6, 2020Updated 6 years ago
- Estimate epidemiological delay distributions with brms☆17Updated this week
- Covid19 microsimulation☆14May 6, 2020Updated 6 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Feb 2, 2023Updated 3 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- statistical models to analyze diagnostic tests☆16Nov 19, 2020Updated 5 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Oct 10, 2026Updated 3 weeks ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated last year
- Scripts for estimating and visualizing epidemiological modeling of an epidemic (developed for COVID-19)☆13May 28, 2021Updated 5 years ago
- ☆11Sep 15, 2026Updated last month
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- Contemporary statistical inference for infectious disease models using Stan☆16Mar 3, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R code and documentation to estimate case fatality ratio of COVID-19 from cases outside China☆91Feb 28, 2020Updated 6 years ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Aug 20, 2026Updated 2 months ago
- 建模nCov传播情况☆59Jan 30, 2020Updated 6 years ago
- Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)☆14Feb 21, 2020Updated 6 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 4 years ago
- Estimation of calibration errors.☆17Jun 1, 2024Updated 2 years ago
- ☆10Sep 30, 2025Updated last year