adamkucharski / 2020-ncov
Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infectious Diseases, 2020
☆68Updated last year
Related projects ⓘ
Alternatives and complementary repositories for 2020-ncov
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- A tool to estimate time varying instantaneous reproduction number during epidemics☆94Updated 2 months ago
- Guidelines and forecasts for a collaborative U.S. influenza forecasting project.☆38Updated 4 years ago
- R package for "Epidemics: Models and data using R"☆56Updated 2 years ago
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 9 months ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆40Updated 4 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Temporal variation in transmission during the COVID-19 outbreak☆109Updated 2 years ago
- Extended state-space SIR epidemiological models☆73Updated 3 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆52Updated last month
- Source code for the EpiEstim app.☆31Updated 4 years ago
- COVID-19 Scenario Modeling Hub☆63Updated 3 months ago
- ☆53Updated 10 months ago
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- An R package with Dynamic Models of infectious diseases☆29Updated last week
- SEIR model for COVID-19 infection, including different clinical trajectories of infection☆194Updated 4 years ago
- Bayesian estimation of Rt (C code)☆13Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆115Updated this week
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 3 years ago
- FluSight Forecast Submissions☆18Updated 6 months ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆24Updated 2 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated last year
- epidemia package☆47Updated 2 years ago
- A framework for data-driven stochastic disease spread simulations☆33Updated this week
- Personal blog☆40Updated 4 years ago
- SEIR+ model☆20Updated 2 months ago
- Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitat…☆103Updated last year
- Contemporary statistical inference for infectious disease models using Stan☆15Updated 5 years ago
- Scenario analyses for COVID-19 outbreak in the United Kingdom☆64Updated 4 years ago