cmmid / covid-ageLinks
Analysis code and data for COVID-19 age-specific clinical fraction
☆23Updated 5 years ago
Alternatives and similar repositories for covid-age
Users that are interested in covid-age are comparing it to the libraries listed below
Sorting:
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Updates to the synthetic contact matrices☆37Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Monte-Carlo State Space Models☆19Updated 11 months ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated last week
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 4 months ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆12Updated 2 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- ☆17Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last week
- ☆20Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- Simulation-based Inference for Epidemiological Dynamics☆25Updated last month
- outbreaks: an R package compiling disease outbreak data☆52Updated 2 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated 7 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 5 months ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- FluSight Forecast Submissions☆19Updated last year
- R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for in…☆25Updated 9 months ago