Alternatives and similar repositories for covid-age

Users that are interested in covid-age are comparing it to the libraries listed below

• kingaa / sbied
  Simulation-based Inference for Epidemiological Dynamics
  ☆25Updated 2 months ago
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆48Updated 8 months ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆37Updated last year
• objornstad / epimdr2
  ☆20Updated 2 years ago
• lsbastos / Delay
  Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
  ☆15Updated 6 years ago
• ryantibs / quantgen
  Tools for generalized quantile modeling
  ☆15Updated 2 years ago
• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆19Updated last year
• cbreto / panelPomp
  R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)
  ☆11Updated 10 months ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆38Updated 3 weeks ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated 8 months ago
• jtimonen / lgpr
  R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for in…
  ☆25Updated 10 months ago
• Emergent-Epidemics / infectious_disease_predictability
  Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
  ☆19Updated 5 years ago
• gasparrini / ItalyCOVIDdeath
  Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic
  ☆16Updated 5 months ago
• akira-endo / COVID19_backwardtracing
  Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing
  ☆8Updated 4 years ago
• migariane / TutorialCausalInferenceEstimators
  Introduction to the mosts common estimators and computation in causal inference for epidemiologists: A tutorial
  ☆39Updated 4 years ago
• hikmahealth / covid19countymap
  Hikma Health COVID-19 US County Policy Dataset
  ☆18Updated 2 years ago
• SABS-R3-Epidemiology / epiabm
  Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.
  ☆18Updated 2 weeks ago
• ssp3nc3r / rethinking
  Examples from McElreath's Statistical Rethinking, First edition coded in Stan.
  ☆50Updated 6 years ago
• luisdamiano / stancon18
  A primer on Hidden Markov Models using Stan. A Case Study submitted as a candidate for a contributed talk in StanCon 2018. Under review.
  ☆31Updated 7 years ago
• charlesm93 / stanTutorial
  Files for StanCon 2023 tutorial.
  ☆17Updated last year
• wxwx1993 / GPSmatching
  R Package for "Matching on generalized propensity scores with continuous exposures". An innovative approach for estimating causal effects…
  ☆30Updated 4 months ago
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• oswaldosantos / EpiDynamics
  An R package with Dynamic Models of infectious diseases
  ☆30Updated 8 months ago
• kbubar / vaccine_prioritization
  ☆17Updated 4 years ago
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆116Updated last month
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆55Updated 3 years ago
• to-mi / stan-survival-shrinkage
  Bayesian linear survival analysis with shrinkage priors in Stan
  ☆24Updated 9 years ago
• milkha / Splines_in_Stan
  Implementation of B-Splines in Stan
  ☆51Updated 7 years ago