henrileleu / covid19Links
Covid19 microsimulation
☆15Updated 5 years ago
Alternatives and similar repositories for covid19
Users that are interested in covid19 are comparing it to the libraries listed below
Sorting:
- Inferring high-resolution human mixing patterns for disease modeling☆47Updated 2 years ago
- ☆39Updated last year
- Updates to the synthetic contact matrices☆39Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- ☆23Updated 4 years ago
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆100Updated 4 months ago
- Utility functions for the COVID-19 forecast hub☆18Updated last year
- R package for deriving social mixing matrices from survey data.☆42Updated last week
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 3 years ago
- ☆11Updated 5 years ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 5 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- ☆17Updated 4 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆20Updated last month
- R package for estimating excess deaths from daily count data☆21Updated 7 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- SEIR transmission model of COVID-19. Documentation at:☆52Updated last year
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Points of Significance: Modeling infectious epidemics☆11Updated last year
- COVID-19 Scenario Modeling Hub☆67Updated 6 months ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆21Updated last month
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- European Covid-19 Forecast Hub.☆49Updated last year
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆55Updated last year
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Updated 8 months ago
- epidemia package☆48Updated 3 years ago