henrileleu / covid19Links
Covid19 microsimulation
☆15Updated 5 years ago
Alternatives and similar repositories for covid19
Users that are interested in covid19 are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Updates to the synthetic contact matrices☆36Updated last year
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 weeks ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 4 years ago
- ☆17Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- Utility functions for the COVID-19 forecast hub☆18Updated last year
- ☆40Updated 10 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- ☆41Updated last week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 2 years ago
- epidemia package☆48Updated 2 years ago
- ☆41Updated 3 weeks ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆97Updated 2 weeks ago
- R package for estimating excess deaths from daily count data☆20Updated last month