Analysis of RT-PCR sensitivity by day since exposure or symptom onset
☆25Oct 23, 2020Updated 5 years ago
Alternatives and similar repositories for covidRTPCR
Users that are interested in covidRTPCR are comparing it to the libraries listed below
Sorting:
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 3 years ago
- ☆27Feb 25, 2021Updated 5 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Sep 10, 2024Updated last year
- A repository of the data and code used for aggregating expert predictions of COVID19☆11Oct 25, 2021Updated 4 years ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Jul 13, 2023Updated 2 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 2 years ago
- A cookbook of epidemiological models☆13Mar 1, 2019Updated 7 years ago
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 3 months ago
- Supporting materials for Nishiura et al "Serial interval of novel coronavirus (COVID-19) infections" International journal of infectious …☆14Jun 2, 2020Updated 5 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Jul 11, 2019Updated 6 years ago
- ☆17Feb 23, 2021Updated 5 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)☆14Feb 21, 2020Updated 6 years ago
- Infectious disease model library and utilities☆15Sep 2, 2022Updated 3 years ago
- Covid-19 spread simulator with human mobility and intervention modeling.☆19May 28, 2022Updated 3 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Feb 13, 2025Updated last year
- Covid19 microsimulation☆14May 6, 2020Updated 5 years ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Jul 15, 2022Updated 3 years ago
- Monte-Carlo State Space Models☆19Jul 1, 2024Updated last year
- Linear Algebra for Data Science. A Textbook for Students and Practitioners☆19May 6, 2022Updated 3 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 6 months ago
- Helix® COVID-19 Surveillance☆16Apr 10, 2025Updated 10 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17May 9, 2024Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆17Nov 1, 2021Updated 4 years ago
- R package to rasterize and summarise IUCN range maps☆23Jan 9, 2023Updated 3 years ago
- ☆19Apr 9, 2021Updated 4 years ago
- Derive social mixing matrices from survey data.☆43Updated this week
- Analysing epidemic trends using AutoML approaches.☆19Apr 23, 2021Updated 4 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Dec 22, 2021Updated 4 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Oct 13, 2022Updated 3 years ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆21Oct 1, 2025Updated 5 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- ☆21Feb 15, 2023Updated 3 years ago
- Material for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"☆30May 11, 2022Updated 3 years ago
- ☆23Jan 30, 2021Updated 5 years ago