cobeylab / Rt_estimationLinks
Code to test Rt estimates against synthetic data
☆18Updated 4 years ago
Alternatives and similar repositories for Rt_estimation
Users that are interested in Rt_estimation are comparing it to the libraries listed below
Sorting:
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- ☆17Updated 4 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- ☆27Updated 4 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- Covid-19 epidemiology - data and analysis☆11Updated last year
- R-package for building and fitting Bayesian ODE models in Stan☆28Updated 10 months ago
- ☆42Updated last week
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated last week
- Repository to the R package nowcaster, nowcasting with INLA☆21Updated last week
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- R package for estimating excess deaths from daily count data☆20Updated 3 months ago
- Updates to the synthetic contact matrices☆37Updated last year
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated last week
- epidemia package☆48Updated 3 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 6 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆55Updated 8 months ago