cobeylab / Rt_estimation
Code to test Rt estimates against synthetic data
☆16Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Rt_estimation
- ☆17Updated 3 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆17Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated 11 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Inferring high-resolution human mixing patterns for disease modeling☆42Updated last year
- Covid-19 epidemiology - data and analysis☆11Updated 11 months ago
- R package for estimating excess deaths from daily count data☆20Updated 4 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 months ago
- outbreaks: an R package compiling disease outbreak data☆51Updated last year
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- FluSight Forecast Submissions☆18Updated 7 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- ☆26Updated 3 years ago
- ☆27Updated this week
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆14Updated 5 years ago
- Simulation-based Inference for Epidemiological Dynamics☆25Updated 6 months ago
- R-package for building and fitting Bayesian ODE models in Stan☆25Updated 2 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated last week
- Tools for basic signal processing in epidemiology☆13Updated this week
- Some code for monkeypox☆10Updated last year
- Create Contact Matrices from Population Data☆18Updated 2 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- ☆19Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated last month
- Codebase for WHO estimates of excess mortality associated with the COVID-19 pandemic☆12Updated last year
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week