cobeylab / Rt_estimationLinks
Code to test Rt estimates against synthetic data
☆18Updated 5 years ago
Alternatives and similar repositories for Rt_estimation
Users that are interested in Rt_estimation are comparing it to the libraries listed below
Sorting:
- ☆17Updated 4 years ago
- R package for estimating excess deaths from daily count data☆20Updated 2 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 2 years ago
- Derive social mixing matrices from survey data.☆43Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated 2 years ago
- R-package for building and fitting Bayesian ODE models in Stan☆29Updated last year
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆20Updated 4 years ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Updated last week
- Inferring high-resolution human mixing patterns for disease modeling☆48Updated 3 years ago
- epidemia package☆49Updated 3 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 5 years ago
- Tools for basic signal processing in epidemiology☆12Updated last week
- ☆43Updated 5 months ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆27Updated last month
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Utilities for Scoring and Assessing Predictions☆60Updated last week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆133Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated last week
- Course on nowcasting and forecasting of infectious disease dynamics☆23Updated 3 weeks ago
- ☆27Updated 4 years ago
- Population-wide Testing, Tracing and Isolation Models☆15Updated 5 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆23Updated 4 months ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 3 years ago
- ☆20Updated this week
- Covid-19 epidemiology - data and analysis☆11Updated 2 years ago
- Infectious disease model library and utilities☆15Updated 3 years ago
- R package for real-time Rt estimation with penalized splines☆15Updated 3 weeks ago