☆41Jun 14, 2025Updated last year
Alternatives and similar repositories for GNN-Bottleneck
Users that are interested in GNN-Bottleneck are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆12Dec 28, 2023Updated 2 years ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 3 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Nov 12, 2022Updated 3 years ago
- Code for Molformer (AAAI 2023)☆96Jun 14, 2025Updated last year
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 5 years ago
- Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3☆19Sep 4, 2025Updated 11 months ago
- ☆10Jun 14, 2025Updated last year
- Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]☆33Aug 5, 2023Updated 3 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Dec 11, 2023Updated 2 years ago
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆326Nov 15, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24Nov 6, 2024Updated last year
- ☆19Oct 4, 2022Updated 3 years ago
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- ☆12Dec 2, 2024Updated last year
- ☆77Sep 2, 2020Updated 5 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated 2 years ago
- open source repository☆149Nov 30, 2023Updated 2 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆259Sep 22, 2023Updated 2 years ago
- A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction☆84Nov 12, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- PDB ProtVista Viewer☆11Jul 31, 2026Updated last week
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆368Jun 29, 2023Updated 3 years ago
- ☆19Jun 14, 2025Updated last year
- Heuristic energy-based cyclic peptide design☆15Feb 21, 2025Updated last year
- Transformer for protein function prediction☆34Oct 24, 2024Updated last year
- ☆12Nov 22, 2024Updated last year
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆329Jun 13, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- E(3) equivariant graph neural network for PPI site prediction☆11Sep 18, 2023Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated 2 months ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 3 years ago