Alternatives and similar repositories for awesome-molecule-protein-pretrain-papers

Users that are interested in awesome-molecule-protein-pretrain-papers are comparing it to the libraries listed below

• gersteinlab / GenAI4Drug
  [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
  ☆93Updated last year
• lmqfly / Geometry-Deep-Learning-for-Drug-Discovery
  Geometry Deep Learning for Drug Discovery and Life Science
  ☆71Updated last year
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆119Updated 9 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆111Updated 2 years ago
• samsledje / ConPLex_dev
  ☆54Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated 3 weeks ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆96Updated 7 months ago
• DeepRank / Deeprank-GNN
  Graph Network for protein-protein interface
  ☆120Updated last year
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆119Updated 2 weeks ago
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆121Updated this week
• HUBioDataLab / SELFormer
  SELFormer: Molecular Representation Learning via SELFIES Language Models
  ☆104Updated last year
• asarigun / awesome-denovo-papers
  Awesome De novo drugs design papers
  ☆90Updated 2 years ago
• BytedProtein / ByProt
  ☆207Updated last year
• dmis-lab / PerceiverCPI
  Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction
  ☆38Updated 2 years ago
• CSUBioGroup / DTIAM
  A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.
  ☆52Updated 4 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆121Updated 9 months ago
• Liuxg16 / GeoPPI
  ☆89Updated 3 years ago
• CSUBioGroup / BACPI
  A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.
  ☆32Updated 3 years ago
• wengong-jin / RefineGNN
  ☆130Updated 3 years ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆115Updated last year
• zaixizhang / Awesome-SBDD
  Papers about Structure-based Drug Design (SBDD)
  ☆133Updated 3 months ago
• Barabasi-Lab / AI-Bind
  Interpretable AI pipeline improving binding predictions for novel protein targets and ligands
  ☆40Updated last year
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆66Updated 3 years ago
• KailiWang1 / DeepDTAF
  a deep learning architecture for protein-ligand binding affinity prediction
  ☆76Updated last year
• leeyang / DRfold
  ☆42Updated 2 years ago
• CAODH / EquiScore
  ☆80Updated last year
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆143Updated 2 years ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆164Updated last week
• Layne-Huang / PMDM
  ☆142Updated 4 months ago
• smiles724 / GNN-Bottleneck
  ☆41Updated 5 months ago