Alternatives and similar repositories for RFdiffusion

Users that are interested in RFdiffusion are comparing it to the libraries listed below

• Kuhlman-Lab / evopro
  ☆87Updated last month
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆34Updated last month
• ELELAB / RosettaDDGPrediction
  ☆75Updated 6 months ago
• ibmm-unibe-ch / glycosylator
  A Python framework for the rapid modeling of glycans
  ☆15Updated 7 months ago
• bene837 / af2seq
  ☆44Updated 11 months ago
• atommoyer / stapler
  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins
  ☆23Updated last year
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆20Updated 9 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated 2 months ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆35Updated 3 months ago
• baker-laboratory / CA_RFDiffusion
  ☆71Updated 3 months ago
• regeneron-mpds / propermab
  ☆34Updated 5 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆23Updated 5 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆74Updated last week
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆56Updated this week
• BIMSBbioinfo / PocketVina
  GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…
  ☆62Updated 2 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated last week
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• huhlim / alphafold-multistate
  ☆42Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆48Updated 6 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆52Updated 3 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 3 months ago
• Jfeldman34 / AF3Complex
  ☆42Updated 2 months ago
• iriziotis / Uniprot-PDB-mapper
  Quick mapping of Uniprot sequences to PDB structures
  ☆33Updated 5 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆117Updated 2 months ago
• cddlab / boltz_ext
  ☆13Updated last week
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆67Updated 3 months ago
• ChemBioHTP / EnzyHTP
  EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling
  ☆27Updated this week
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆83Updated 3 weeks ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆70Updated 3 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆65Updated last month