jzhoulab / ddsmLinks
Dirichlet Diffusion Score Model for Biological Sequence Generation.
☆55Updated 5 months ago
Alternatives and similar repositories for ddsm
Users that are interested in ddsm are comparing it to the libraries listed below
Sorting:
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆56Updated 2 months ago
- ☆116Updated last year
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆32Updated last year
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆22Updated 2 months ago
- Code for the paper https://arxiv.org/abs/2402.04997☆81Updated last year
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆66Updated 11 months ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆73Updated 2 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆64Updated 11 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Supervised Training of Conditional Monge Maps☆18Updated last year
- Official implementation of "Learning the language of protein structures"☆36Updated 3 weeks ago
- Protein Design with Guided Discrete Diffusion☆132Updated last year
- ☆182Updated last year
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆24Updated last year
- Protein structure datasets for machine learning.☆111Updated 2 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆114Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆92Updated 2 years ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- ☆44Updated 3 weeks ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆40Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 2 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 9 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆214Updated last week
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆157Updated last year
- A Modular Architecture for Deep Learning Systems☆41Updated last month
- The code for "Learning Molecular Representation in a Cell"☆34Updated 4 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated last year
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated last year