jzhoulab / ddsmLinks
Dirichlet Diffusion Score Model for Biological Sequence Generation.
☆62Updated 8 months ago
Alternatives and similar repositories for ddsm
Users that are interested in ddsm are comparing it to the libraries listed below
Sorting:
- Aligned Diffusion Schroedinger Bridges (UAI 2023)☆33Updated 2 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆63Updated 5 months ago
- ☆125Updated last year
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆29Updated 6 months ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆67Updated last year
- Code for the paper https://arxiv.org/abs/2402.04997☆97Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆70Updated last year
- Protein Design with Guided Discrete Diffusion☆136Updated last year
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- ☆200Updated last year
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆45Updated 11 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- MSA Transformer reproduction code☆86Updated 4 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆96Updated 2 years ago
- ☆48Updated 3 months ago
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆24Updated last year
- A Modular Architecture for Deep Learning Systems☆45Updated 5 months ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆113Updated last year
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆47Updated 7 months ago
- Protein structure datasets for machine learning.☆112Updated 6 months ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Updated 2 years ago
- a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)☆89Updated 2 years ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated 2 years ago
- Supervised Training of Conditional Monge Maps☆19Updated 2 years ago