Dirichlet Diffusion Score Model for Biological Sequence Generation.
☆63Feb 12, 2025Updated last year
Alternatives and similar repositories for ddsm
Users that are interested in ddsm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Oct 21, 2024Updated last year
- ☆137May 7, 2024Updated 2 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆70May 10, 2025Updated 11 months ago
- Official implementation of the NeurIPS 24 paper of statistical flow matching (SFM) for discrete generation.☆48Nov 7, 2024Updated last year
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆38Jan 7, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆51Oct 4, 2024Updated last year
- Code for the paper https://arxiv.org/abs/2402.04997☆107Feb 8, 2024Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆52Jan 19, 2026Updated 3 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 10 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated last year
- Genomic Pre-trained Network☆338Mar 25, 2026Updated last month
- ☆30May 15, 2023Updated 2 years ago
- ☆21Sep 11, 2023Updated 2 years ago
- Deep Generalized Schrödinger Bridge, NeurIPS 2022 Oral☆52Oct 28, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Mar 27, 2026Updated last month
- A model developed for the generation of scRNA-seq data☆90Jan 21, 2026Updated 3 months ago
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆16Aug 9, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆325Jul 25, 2025Updated 9 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- ☆14Mar 2, 2023Updated 3 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆478Updated this week
- Diffusion-based all-atom protein generative model.☆235Aug 27, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PDB ProtVista Viewer☆11Jul 8, 2025Updated 9 months ago
- a lightweight distogram-prediction model trained via contrastive learning☆14Apr 20, 2026Updated 2 weeks ago
- ☆224Mar 2, 2024Updated 2 years ago
- Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"☆11May 26, 2016Updated 9 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆104Mar 3, 2025Updated last year
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆669Jan 15, 2026Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆782Apr 22, 2025Updated last year
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Sep 24, 2022Updated 3 years ago
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆34Apr 18, 2025Updated last year
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆93Dec 29, 2023Updated 2 years ago
- ☆34Jan 27, 2025Updated last year