Dirichlet Diffusion Score Model for Biological Sequence Generation.
☆65Feb 12, 2025Updated last year
Alternatives and similar repositories for ddsm
Users that are interested in ddsm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆141May 7, 2024Updated 2 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆74May 10, 2025Updated last year
- Official implementation of the NeurIPS 24 paper of statistical flow matching (SFM) for discrete generation.☆48Nov 7, 2024Updated last year
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆39Jan 7, 2026Updated 6 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code for the paper https://arxiv.org/abs/2402.04997☆109Feb 8, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆56Jan 19, 2026Updated 5 months ago
- ☆19Jun 11, 2026Updated 3 weeks ago
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- Genomic Pre-trained Network☆348Jun 5, 2026Updated last month
- ☆30May 15, 2023Updated 3 years ago
- ☆21Sep 11, 2023Updated 2 years ago
- Deep Generalized Schrödinger Bridge, NeurIPS 2022 Oral☆53Oct 28, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆23Mar 27, 2026Updated 3 months ago
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆16Aug 9, 2024Updated last year
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 5 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆338Jul 25, 2025Updated 11 months ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- ☆14Mar 2, 2023Updated 3 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆485Jun 18, 2026Updated 2 weeks ago
- Protein Design with Guided Discrete Diffusion☆143Feb 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- PDB ProtVista Viewer☆11Jun 30, 2026Updated last week
- a lightweight distogram-prediction model trained via contrastive learning☆15May 3, 2026Updated 2 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆231Mar 2, 2024Updated 2 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 3 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆105Mar 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 3 years ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆671Jan 15, 2026Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆793Apr 22, 2025Updated last year
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆35Apr 18, 2025Updated last year
- ☆92May 29, 2025Updated last year
- ☆34Jan 27, 2025Updated last year