Dirichlet Diffusion Score Model for Biological Sequence Generation.
☆65Feb 12, 2025Updated last year
Alternatives and similar repositories for ddsm
Users that are interested in ddsm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆142May 7, 2024Updated 2 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆78May 10, 2025Updated last year
- Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (…☆39Jan 7, 2026Updated 8 months ago
- Official implementation of the NeurIPS 24 paper of statistical flow matching (SFM) for discrete generation.☆49Nov 7, 2024Updated last year
- ☆18May 20, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆61Jul 17, 2026Updated last month
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆354Updated this week
- Deep Generalized Schrödinger Bridge, NeurIPS 2022 Oral☆53Oct 28, 2022Updated 3 years ago
- ☆22Sep 11, 2023Updated 2 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- A model developed for the generation of scRNA-seq data☆95Jan 21, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆17Aug 9, 2024Updated 2 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 7 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- ☆14Mar 2, 2023Updated 3 years ago
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆488Updated this week
- The Family of Diffusion Protein Language Models (DPLM)☆344Jul 25, 2025Updated last year
- PDB ProtVista Viewer☆11Aug 9, 2026Updated 3 weeks ago
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"☆11May 26, 2016Updated 10 years ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated 5 months ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated last month
- ☆21Jun 11, 2026Updated 2 months ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆107Mar 3, 2025Updated last year
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆682Jan 15, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆23Mar 27, 2026Updated 5 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆806Apr 22, 2025Updated last year
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆31Sep 24, 2022Updated 3 years ago
- RNA-seq prediction with deep convolutional neural networks.☆262Aug 28, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- A neural network model to predict splice site usage and splicing-altering mutations☆17Jul 24, 2025Updated last year
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆96Dec 29, 2023Updated 2 years ago