Alternatives and similar repositories for ensembl

Users that are interested in ensembl are comparing it to the libraries listed below

• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 2 weeks ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆158Updated last week
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• Ensembl / ensembl-compara
  The Ensembl Compara Perl API and SQL schema
  ☆54Updated this week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• Ensembl / ensembl-rest
  Language agnostic RESTful data access to Ensembl data over HTTP
  ☆148Updated last month
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆135Updated 4 years ago
• FusionInspector / FusionInspector
  FusionInspector code
  ☆58Updated 2 weeks ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• igvteam / igv-webapp
  IGV Web App
  ☆123Updated 2 weeks ago
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆140Updated last month
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆135Updated 2 years ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• ncbi / ngs-tools
  ☆107Updated 2 months ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆173Updated last year
• alyssafrazee / ballgown
  Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
  ☆147Updated 4 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆116Updated 8 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆106Updated 2 months ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆127Updated last week
• maasha / biopieces
  Biopieces is a bioinformatic framework of tools easily used and easily created.
  ☆142Updated 7 years ago
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆103Updated 6 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆79Updated 2 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆138Updated this week
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆351Updated 4 months ago
• DiltheyLab / HLA-LA
  Fast HLA type inference from whole-genome data
  ☆136Updated 4 months ago