The Ensembl Core Perl API and SQL schema
☆83Apr 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for ensembl
Users that are interested in ensembl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code to run an Ensembl website☆22Apr 22, 2026Updated last week
- The Ensembl Variation Perl API and SQL schema☆30Apr 28, 2026Updated last week
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Apr 28, 2026Updated last week
- The Ensembl Compara Perl API and SQL schema☆56Apr 28, 2026Updated last week
- Language agnostic RESTful data access to Ensembl data over HTTP☆150Apr 7, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19Apr 27, 2026Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆546Apr 13, 2026Updated 3 weeks ago
- Ensembl tools☆34Nov 3, 2025Updated 6 months ago
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆26Jan 7, 2025Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Apr 24, 2026Updated last week
- A needle plot for mutation data☆27Aug 31, 2017Updated 8 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆167Mar 20, 2026Updated last month
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated last year
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Braille Characters for Terminal Graphical Applications☆25Jan 11, 2023Updated 3 years ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- Hashids, ported for Perl☆17Dec 17, 2020Updated 5 years ago
- An Introduction to Mojolicious By Example☆10Sep 9, 2020Updated 5 years ago
- *DEPRECATED* Job management for the Ensembl Genebuild pipeline☆62Feb 29, 2024Updated 2 years ago
- Practical, reusable scripts for bioinformatics☆102Feb 12, 2019Updated 7 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated last month
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 8 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- Linking in Go code via XS☆28Sep 12, 2015Updated 10 years ago
- Decommissioned: GOV.UK's Capistrano-based application deployment code. Replaced by alphagov/govuk-helm-charts.☆13Aug 24, 2023Updated 2 years ago
- Powerful long read aligner for Ruby☆14Feb 5, 2026Updated 3 months ago
- Perl container images based on Red Hat Software Collections and intended for OpenShift and general usage, that provide a platform for bui…☆17Updated this week
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- ggplot port in Perl☆14Mar 15, 2023Updated 3 years ago
- Universal RObust Peak Annotator☆16Dec 19, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- the code behind matrix.cpantesters.org☆30Apr 23, 2026Updated last week
- XS experiments of an XS n00b☆17Aug 24, 2012Updated 13 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆32Updated this week
- Manages uploaded assets (images, PDFs etc.) for applications on GOV.UK☆11Updated this week
- ☆11Nov 21, 2025Updated 5 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago