Pangenome analysis using random forests
☆16Dec 9, 2025Updated 5 months ago
Alternatives and similar repositories for PanForest
Users that are interested in PanForest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- R functions to dead-reckon reckon animal movement from raw motion sensor data☆10Aug 1, 2023Updated 2 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- (DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction☆12Nov 20, 2025Updated 6 months ago
- ☆22Jan 29, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Feb 4, 2026Updated 3 months ago
- ☆12Feb 3, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14May 14, 2026Updated 2 weeks ago
- ☆13Jan 29, 2025Updated last year
- Draw pan- and core-genome curves from proteinortho output☆13Oct 26, 2023Updated 2 years ago
- 天津医科大学,生物医学工程与技术学院,《Linux系统概论》课程资料☆18Mar 5, 2026Updated 2 months ago
- ☆13Jun 17, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago
- Calculate distances between phylogenetic trees in R☆36May 22, 2026Updated last week
- Protein design and variant prediction using autoregressive generative models☆23Feb 27, 2023Updated 3 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- ☆25Dec 3, 2025Updated 5 months ago
- Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE☆12Oct 20, 2025Updated 7 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- ☆16Jun 21, 2023Updated 2 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- ☆13Mar 28, 2018Updated 8 years ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆40Apr 28, 2026Updated last month
- Variant call adjudication☆17Jun 13, 2024Updated last year
- ☆27Sep 17, 2024Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆17Jun 28, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆31Feb 3, 2026Updated 3 months ago
- implicit pangenome graph☆107Updated this week
- 一个可以让 Bob 翻译使用大模型进行OCR的插件☆42May 1, 2026Updated last month
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆22Updated this week
- Transposable Elements MOvement detection using LOng reads☆25Mar 31, 2026Updated 2 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 3 months ago
- A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …☆15Oct 6, 2022Updated 3 years ago