Pangenome analysis using random forests
☆16Dec 9, 2025Updated 9 months ago
Alternatives and similar repositories for PanForest
Users that are interested in PanForest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated last month
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- R functions to dead-reckon reckon animal movement from raw motion sensor data☆11Aug 1, 2023Updated 3 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Mar 8, 2026Updated 6 months ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 8 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- (DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction☆12Jun 5, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Jan 29, 2024Updated 2 years ago
- Phylogenetic, Distance and Other Calculations on VCF and Fasta Files☆31Apr 30, 2026Updated 4 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆27Updated this week
- ☆13Jul 16, 2026Updated last month
- ☆14Feb 3, 2025Updated last year
- RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust☆56Aug 3, 2026Updated last month
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated 5 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- Construct a Physical Map from Linked Reads☆20Apr 1, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jan 29, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated last month
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Aug 6, 2026Updated last month
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago
- 天津医科大学，生物医学工程与技术学院，《Linux系统概论》课程资料☆18Mar 5, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆26Aug 10, 2021Updated 5 years ago
- rhierbaps: R implementation of hierBAPS☆36Feb 23, 2026Updated 6 months ago
- Generate interactive dotplot from mummer4 output using plotly☆28Feb 29, 2020Updated 6 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 4 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- Tools for working with agp files☆19Jun 26, 2025Updated last year