Alternatives and similar repositories for course_materials

Users that are interested in course_materials are comparing it to the libraries listed below

• ComputationalAgingLab / Methylotl
  ☆11Updated last year
• serjisa / transcriptomics.msu
  Materials for Transcripromics Data Analysis course at Moscow State University
  ☆74Updated last year
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆203Updated 5 years ago
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆305Updated 7 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆335Updated last month
• usadellab / Trimmomatic
  ☆284Updated 3 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆162Updated 2 years ago
• nextflow-io / training
  Nextflow training material
  ☆212Updated this week
• sarahtolba / -Bulk-RNA-seq-Analysis-Tutorial-Mus-musculus-
  This repo is designed as a step-by-step tutorial to teach RNA-seq analysis
  ☆16Updated last month
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆364Updated this week
• linsalrob / ComputationalGenomicsManual
  Robs manual for the computational genomics and bioinformatics class.
  ☆265Updated last year
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆593Updated last year
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆246Updated this week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆388Updated 2 months ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆250Updated this week
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆455Updated last year
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆348Updated last month
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆204Updated last month
• lh3 / miniprot
  Align proteins to genomes with splicing and frameshift
  ☆395Updated last month
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆429Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆351Updated last month
• TransDecoder / TransDecoder
  TransDecoder source
  ☆300Updated 4 months ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆633Updated last month
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆303Updated 2 years ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆202Updated this week
• raphaelmourad / LLM-for-genomics-training
  Tutorial on large language models for genomics
  ☆267Updated 8 months ago
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆293Updated 3 months ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆235Updated this week
• deanslee / FigureOneLab
  Hone computational biology skills by re-enacting Figure 1 of modern biology papers
  ☆264Updated last year
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆219Updated 2 months ago