Alternatives and similar repositories for Methylotl

Users that are interested in Methylotl are comparing it to the libraries listed below

• Python-BI-2023 / course_materials
  This is repo for the materials of the BI2023 python course
  ☆20Updated last year
• serjisa / transcriptomics.msu
  Materials for Transcripromics Data Analysis course at Moscow State University
  ☆74Updated last year
• j-andrews7 / awesome-bioinformatics-benchmarks
  A curated and summarized list of bioinformatics bench-marking papers and resources.
  ☆350Updated last month
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆335Updated 2 weeks ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆200Updated 5 years ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆352Updated 3 months ago
• hbctraining / DGE_workshop
  ☆406Updated 3 years ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆591Updated last year
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆359Updated 3 weeks ago
• nextflow-io / training
  Nextflow training material
  ☆207Updated this week
• deanslee / FigureOneLab
  Hone computational biology skills by re-enacting Figure 1 of modern biology papers
  ☆263Updated last year
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆351Updated last week
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆488Updated 7 months ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆301Updated 2 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆348Updated 3 weeks ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆160Updated 2 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆333Updated 4 years ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• hbctraining / Intro-to-DGE
  ☆211Updated 4 months ago
• usadellab / Trimmomatic
  ☆282Updated 2 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆318Updated 2 years ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆447Updated last year
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆266Updated this week
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆390Updated 3 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆387Updated 2 months ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆286Updated 4 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆406Updated 3 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆682Updated 6 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆516Updated 2 years ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆492Updated 2 months ago