schaugf / HEnorm_pythonLinks
H&E histopathological staining normalization
☆110Updated 5 years ago
Alternatives and similar repositories for HEnorm_python
Users that are interested in HEnorm_python are comparing it to the libraries listed below
Sorting:
- Some stain normalization code☆93Updated 3 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆70Updated 3 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆102Updated 6 years ago
- Codes for Fast GPU-Enabled Color Normalization of Whole Slide Images in Digital Pathology☆75Updated 5 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆142Updated 4 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆74Updated 11 months ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆163Updated last year
- HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)☆94Updated 5 years ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- ☆69Updated 4 years ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- Interactive Segmentation of Nucleus☆66Updated 3 years ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆177Updated 4 years ago
- This repository contains the implementation of TILAb-score as described in the original paper.☆18Updated 6 years ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- This is the MATLAB code for stain separation and color normalization in computational pathology (histopathological images)☆68Updated 9 years ago
- DeepLearning - Camelyon16 dataset☆127Updated 7 years ago
- Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.☆55Updated 3 years ago
- Python Whole Slide Image Preprocessing☆299Updated 3 years ago
- ☆57Updated 3 years ago
- Software used by the AGH team during the ANHIR challenge.☆28Updated 5 years ago
- StainNet: a fast and robust stain normalization network☆51Updated 4 years ago
- Deep Convolutional Gaussian Mixture Model for Stain-Color Normalization in Histopathological H&E Images☆82Updated 4 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆79Updated 10 months ago
- Stain normalization tools for histological analysis and computational pathology☆166Updated last month
- Code from Foersch et al. (Under Construction / Development)☆38Updated 2 years ago
- First commit☆65Updated 3 years ago
- Pretrained model for self supervised histopathology☆121Updated 3 years ago