ddd9898 / DeepNanoLinks
Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
☆42Updated last year
Alternatives and similar repositories for DeepNano
Users that are interested in DeepNano are comparing it to the libraries listed below
Sorting:
- Fast deep learning methods for large-scale protein-protein interaction screening☆113Updated 5 months ago
- ☆39Updated last year
- Code for humanization of antibody and nanobody☆67Updated 4 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆22Updated 9 months ago
- ☆45Updated 9 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆31Updated last year
- ☆61Updated last year
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆27Updated 2 months ago
- ☆47Updated 11 months ago
- ☆73Updated 5 years ago
- ☆28Updated 4 months ago
- ☆29Updated 2 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- An antibody-specific language model focusing on NGL prediction☆32Updated last year
- ☆18Updated last year
- Efficient implementatin of ESM family.☆78Updated 3 months ago
- Antibody-specific masked language model☆65Updated 2 years ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Updated last year
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 2 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆38Updated 7 months ago
- ☆27Updated 4 months ago
- ☆93Updated 2 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆71Updated last week
- Active Learning-Assisted Directed Evolution for Protein Engineering☆76Updated 2 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆68Updated 4 months ago
- Polyreactivity Website☆19Updated 2 years ago
- AlphaBind code + model accompanying pre-print☆87Updated 5 months ago
- ☆54Updated 3 months ago