ZhiGroup / pytorch_ehrLinks
source codes based on PyTorch to analyze EHR
☆149Updated 2 years ago
Alternatives and similar repositories for pytorch_ehr
Users that are interested in pytorch_ehr are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago
- ☆40Updated 3 years ago
- Patient Code & Text Representation Learning☆19Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆314Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆91Updated 2 months ago
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 6 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆89Updated 3 years ago
- ☆47Updated 2 years ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆36Updated 3 years ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆72Updated 7 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆142Updated 5 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 3 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆59Updated 2 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆293Updated 4 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆197Updated last month
- circEWS public code☆76Updated last year
- ☆229Updated 4 years ago
- ☆107Updated 4 years ago
- ☆15Updated 5 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆123Updated 2 years ago
- A customizable pipeline for multimodal data extraction from MIMIC-IV!☆294Updated last week
- This repository contains the code used for Temporal Pointwise Convolutional Networks for Length of Stay Prediction in the Intensive Care …☆83Updated 9 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆44Updated 2 months ago
- Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"☆274Updated last year
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆64Updated 2 years ago
- ☆27Updated 6 years ago
- Code for doing machine learning with various EHRs☆22Updated 2 years ago
- ☆131Updated last year
- Code and website related to the eICU Collaborative Research Database☆377Updated last year