ZhiGroup / pytorch_ehrLinks
source codes based on PyTorch to analyze EHR
☆143Updated last year
Alternatives and similar repositories for pytorch_ehr
Users that are interested in pytorch_ehr are comparing it to the libraries listed below
Sorting:
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆295Updated last year
- ☆41Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated last month
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 6 years ago
- Patient Code & Text Representation Learning☆20Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆128Updated 2 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated 2 years ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆74Updated last week
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆34Updated 3 years ago
- ☆42Updated last year
- circEWS public code☆70Updated 9 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last month
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆184Updated 6 months ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆25Updated 3 years ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- ☆73Updated 4 months ago
- ☆223Updated 3 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆284Updated 4 years ago
- ☆104Updated 3 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- ☆25Updated 5 years ago
- ☆33Updated 3 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated 2 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- A customizable pipeline for data extraction from MIMIC-IV.☆248Updated this week
- Blog post on Medium☆49Updated 2 years ago
- Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"☆267Updated 10 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆38Updated last week
- ☆32Updated 2 years ago