OHDSI / Tutorial-ETL
Course materials for OHDSI ETL tutorial
☆45Updated 6 months ago
Alternatives and similar repositories for Tutorial-ETL:
Users that are interested in Tutorial-ETL are comparing it to the libraries listed below
- A package supporting the conversion from Synthea CSV to OMOP CDM☆107Updated 2 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated last month
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆80Updated last week
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆95Updated 10 months ago
- Oncology Working Group Repository☆56Updated 2 weeks ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆36Updated last year
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 5 months ago
- A tool to help improve data quality standards in observational data science.☆158Updated 3 months ago
- CDM Builder leveraging AWS Lambda☆16Updated this week
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆52Updated 2 years ago
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆100Updated 3 years ago
- Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a…☆136Updated last week
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆55Updated 4 years ago
- Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.☆98Updated last week
- ☆27Updated 6 years ago
- OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications☆137Updated this week
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆43Updated 2 weeks ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last week
- ☆25Updated 2 months ago
- Data Ingestion and Harmonization☆43Updated 2 years ago
- Runs CQL phenotype definitions against an OMOP repository☆12Updated 2 years ago
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆43Updated last week
- ☆12Updated 7 months ago
- The OHDSI repository to provide comprehensive evidence for the covid-19☆13Updated 4 years ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆32Updated 3 years ago
- ☆28Updated last year
- WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an E…☆189Updated last week
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆44Updated 3 weeks ago
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆25Updated this week