kind-lab / mimic-fhir
A version of MIMIC-IV in FHIR
☆40Updated 3 months ago
Alternatives and similar repositories for mimic-fhir:
Users that are interested in mimic-fhir are comparing it to the libraries listed below
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last week
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆63Updated last month
- Winners of the SNOMED CT Entity Linking Challenge☆29Updated 10 months ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆34Updated 2 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆91Updated 8 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆46Updated this week
- A collection of ETLs from common data formats to Medical Event Data Standard☆27Updated this week
- FHIRPath implementation in Python.☆63Updated 2 weeks ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆55Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆123Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆32Updated this week
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- Open source clinical text de-identification☆122Updated 6 months ago
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆11Updated 4 years ago
- Conversion from FHIR HL7 to OMOP CDM☆17Updated 3 weeks ago
- General tutorials for the setup and use of MedCAT.☆36Updated last month
- FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…☆48Updated last year
- ETL Tool for converting datasets to OMOP CDM☆30Updated 2 years ago
- Course materials for OHDSI ETL tutorial☆45Updated 3 months ago
- An R package for performing various cohort diagnostics.☆42Updated last month
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆33Updated last year
- Benchmarking Large Language Models for FHIR☆25Updated 2 months ago
- Mapping the MIMIC-III database to the OMOP schema☆131Updated 11 months ago
- Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.☆95Updated this week
- A package supporting the conversion from Synthea CSV to OMOP CDM☆102Updated 2 months ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…