kind-lab / mimic-fhirLinks
A version of MIMIC-IV in FHIR
☆48Updated last year
Alternatives and similar repositories for mimic-fhir
Users that are interested in mimic-fhir are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆67Updated 5 months ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated 3 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆97Updated 5 months ago
- FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…☆72Updated 4 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆92Updated last month
- A collection of ETLs from common data formats to Medical Event Data Standard☆37Updated 4 months ago
- Code for BEHRT: Transformer for Electronic Health Records☆118Updated 2 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆160Updated this week
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- A simple set of MEDS polars-based ETL and transformation functions☆39Updated 3 weeks ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- ☆31Updated 3 years ago
- Open source clinical text de-identification☆144Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆48Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆308Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆202Updated 6 months ago
- Python utilities for working with FHIR, including libraries to build simple, flat FHIR views in BigQuery.☆94Updated last month
- General tutorials for the setup and use of MedCAT.☆40Updated 6 months ago
- ☆80Updated 9 months ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.☆114Updated this week
- A toolkit for evaluating and monitoring AI models in clinical settings☆87Updated this week
- A package supporting the conversion from Synthea CSV to OMOP CDM☆119Updated 9 months ago
- Benchmarking Large Language Models for FHIR☆42Updated last week
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- General Healthcare Predictive Framework☆22Updated last week
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆140Updated 3 months ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆191Updated last month
- This project provides the source for the SQL on FHIR v2.0 Implementation Guide☆124Updated last week