isaacrob / treesneLinks
☆63Updated 5 years ago
Alternatives and similar repositories for treesne
Users that are interested in treesne are comparing it to the libraries listed below
Sorting:
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Density-preserving data visualization tools den-SNE and densMAP☆115Updated 4 years ago
- Sequence data label generation and ingestion into deep learning models☆11Updated 4 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Updated 5 years ago
- Latent spaces for single cells☆21Updated 2 years ago
- Tools for building and manipulating graphs in Python☆45Updated 3 weeks ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Code for the paper on t-SNE with variable degree of freedom☆12Updated 6 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 7 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- ☆11Updated 8 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆103Updated last month
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 5 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- ☆21Updated 8 years ago
- Explaining dimensionality results using SHAP values☆55Updated 10 months ago
- This Repository Contains the Source Code for the Python Implementation of Self Organizing Nebulous Growths☆23Updated 2 years ago
- Contrastive neighbor embeddings☆56Updated last week
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆31Updated 3 years ago
- Archetypal Analysis network (AAnet)☆37Updated 9 months ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Updated 4 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- Hierarchical graph clustering☆38Updated 7 years ago
- Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep…☆152Updated 4 years ago
- Contrastive PCA☆229Updated last month
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆45Updated 5 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 4 years ago