isaacrob / treesne
☆64Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for treesne
- Python Wrapper for FIt-SNE☆45Updated 3 years ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆148Updated 3 years ago
- Density-preserving data visualization tools den-SNE and densMAP☆110Updated 3 years ago
- Latent spaces for single cells☆22Updated last year
- Tools for building and manipulating graphs in Python☆41Updated last year
- Archetypal Analysis network (AAnet)☆31Updated 3 weeks ago
- generalized principal component analysis (GLM-PCA) implemented in python☆57Updated 3 years ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 4 years ago
- A library to simulate single-cell data☆2Updated last year
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆40Updated 4 years ago
- Hierarchical graph clustering☆37Updated 6 years ago
- Code for the paper on t-SNE with variable degree of freedom☆12Updated 5 years ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 3 years ago
- ☆11Updated 7 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Updated 4 years ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 2 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 6 years ago
- A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…☆47Updated 3 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- ☆13Updated 4 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆95Updated last year
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆38Updated 3 years ago
- ☆21Updated 7 years ago
- Contrastive neighbor embeddings☆52Updated 6 months ago
- This Repository Contains the Source Code for the Python Implementation of Self Organizing Nebulous Growths☆23Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year
- SemI-SUpervised generative Autoencoder models for single cell data☆18Updated 3 years ago