iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic b…
☆66Apr 7, 2026Updated 3 months ago
Alternatives and similar repositories for iBioSim
Users that are interested in iBioSim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pure Python implementation of the SBOL standard.☆21Feb 13, 2025Updated last year
- SBOL Designer Project☆31Jun 4, 2021Updated 5 years ago
- Web application enabling users and software to browse, upload, and share synthetic biology designs☆83Updated this week
- C++ implementation of SBOL 2.3.2☆17Oct 13, 2020Updated 5 years ago
- General low-level API☆50Jul 18, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆12Oct 4, 2024Updated last year
- Batch domestication of genetic parts with Python☆16May 12, 2025Updated last year
- Native python implementation of SBOL 3.0 specification☆44Mar 26, 2025Updated last year
- DNA overhang misannealing data for Python☆13May 15, 2025Updated last year
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 4 years ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 6 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- Command-line utilities and scripts for manipulating SBOL data☆21Oct 26, 2025Updated 8 months ago
- Repository for collective design of an iGEM DNA distribution☆44Apr 7, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Java Library for Synthetic Biology Open Language (SBOL)☆41Jul 12, 2025Updated last year
- The Synthetic Biology Open Language (SBOL)☆23Apr 25, 2023Updated 3 years ago
- A route planner for DNA assembly☆37May 12, 2025Updated last year
- Genetic circuit design automation☆874Sep 19, 2022Updated 3 years ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆48May 13, 2026Updated 2 months ago
- DNA plotting library for Python☆301Mar 20, 2024Updated 2 years ago
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated last month
- A collection of M models downloaded from published studies☆17Feb 18, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.☆31May 10, 2025Updated last year
- Just some light reading.☆22Jan 22, 2020Updated 6 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Apr 22, 2026Updated 2 months ago
- P450Diffusion: A tool for designing P450 sequences based on diffusion model☆27Apr 28, 2026Updated 2 months ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 7 years ago
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated 2 years ago
- Using our experimental screening dataset, we trained machine learning models to predict sgRNA activity.☆13Oct 16, 2018Updated 7 years ago
- Predict DNA assembly clone validity rates - powered by Kappa☆10Jul 24, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A deep learning method for sgRNA off-target propensity prediction.☆16Mar 17, 2020Updated 6 years ago
- Modular cloning simulation with the MoClo framework in Python☆11May 3, 2022Updated 4 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Machine learning tools for Chemistry☆10Jan 5, 2018Updated 8 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆32Apr 9, 2025Updated last year
- ☆17May 8, 2024Updated 2 years ago
- TISIGNER: Unleash the power of synthetic biology☆30May 24, 2025Updated last year