MyersResearchGroup / iBioSimLinks
iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic b…
☆61Updated 8 months ago
Alternatives and similar repositories for iBioSim
Users that are interested in iBioSim are comparing it to the libraries listed below
Sorting:
- SBOL Designer Project☆32Updated 4 years ago
- The BiGG Models website server☆83Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆63Updated 2 months ago
- General low-level API☆50Updated 3 years ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 3 months ago
- Web application enabling users and software to browse, upload, and share synthetic biology designs☆76Updated last week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- A route planner for DNA assembly☆36Updated 2 months ago
- nucleic acid folding☆94Updated last year
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆182Updated this week
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Release of the whole cell E. coli model.☆68Updated 7 months ago
- Metabolic Engineering Workbench☆40Updated last year
- Efficiently keep track of changes to genomes☆38Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 weeks ago
- Laboratory Open Protocol (LabOP) Language☆42Updated 10 months ago
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- Native python implementation of SBOL 3.0 specification☆40Updated 4 months ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- repository-based plasmid design☆29Updated 2 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- 🎺 Plot DNA digestion band patterns with Python☆20Updated 2 months ago
- Codon usage tables in code-friendly format + Python bindings☆37Updated 2 months ago
- Curation and analysis of metabolic models☆35Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 2 months ago
- Python framework for Systems Biology modeling☆183Updated 2 weeks ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago