Morteza-M-Saber / BacGWASimLinks
A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
☆22Updated 4 years ago
Alternatives and similar repositories for BacGWASim
Users that are interested in BacGWASim are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 3 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 3 weeks ago
- Phylogenetic orthology inference for comparative genomics☆62Updated last week
- ☆31Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- ☆27Updated 5 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Bifrost graph gene caller.☆95Updated last month
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- orthology assignment using phylogenetic and network analyses☆48Updated 7 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- ☆41Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆29Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆65Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆51Updated last week
- A program for detection of tRNA genes☆71Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago