Alternatives and similar repositories for Combs2024

Users that are interested in Combs2024 are comparing it to the libraries listed below

• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆72Updated 2 weeks ago
• Niopek-Lab / ProDomino
  ☆22Updated 11 months ago
• bunzela / AIzymes
  ☆61Updated last month
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆23Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated 3 weeks ago
• ikalvet / heme_binder_diffusion
  ☆142Updated 5 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 9 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated last month
• snufoodbiochem / Alphafold3_tools
  ☆25Updated 10 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆58Updated 2 weeks ago
• guyujun / FunclibLocal
  Rosetta Funclib
  ☆24Updated 5 years ago
• hongliangduan / HighFold
  ☆36Updated last year
• yehlincho / BoltzDesign1
  ☆228Updated 4 months ago
• BIMSBbioinfo / PocketVina
  GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…
  ☆67Updated 3 weeks ago
• polizzilab / LASErMPNN
  All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model
  ☆25Updated last week
• npolizzi / Combs
  Convergent motifs for binding sites
  ☆26Updated 3 years ago
• baker-laboratory / CA_RFDiffusion
  ☆75Updated 6 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆171Updated 8 months ago
• Alex-Abrudan / DynamicMPNN
  ☆39Updated 4 months ago
• huhlim / alphafold-multistate
  ☆41Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆62Updated 10 months ago
• Kortemme-Lab / flex_ddG_tutorial
  ☆135Updated 3 years ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆216Updated last month
• maranasgroup / CatPred
  Machine Learning models for in vitro enzyme kinetic parameter prediction
  ☆64Updated 8 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆113Updated last month
• laukoag / serine-hydrolase-design
  ☆62Updated 8 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 11 months ago
• carbonsilicon-ai / CarsiDock
  Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…
  ☆103Updated 4 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆58Updated last year