Alternatives and similar repositories for Combs2024

Users that are interested in Combs2024 are comparing it to the libraries listed below

• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆75Updated 3 weeks ago
• Niopek-Lab / ProDomino
  ☆22Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆77Updated last month
• bunzela / AIzymes
  ☆65Updated 3 months ago
• npolizzi / Combs
  Convergent motifs for binding sites
  ☆26Updated 3 years ago
• baker-laboratory / CA_RFDiffusion
  ☆76Updated 7 months ago
• ELELAB / RosettaDDGPrediction
  ☆84Updated 2 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 10 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆70Updated 6 months ago
• ikalvet / heme_binder_diffusion
  ☆146Updated 6 months ago
• polizzilab / LASErMPNN
  All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN
  ☆27Updated 2 weeks ago
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆23Updated last year
• snufoodbiochem / Alphafold3_tools
  ☆25Updated 11 months ago
• hongliangduan / HighFold
  ☆38Updated last year
• BIMSBbioinfo / PocketVina
  GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…
  ☆68Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆236Updated this week
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 2 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆114Updated 3 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆60Updated last year
• laukoag / serine-hydrolase-design
  ☆65Updated 9 months ago
• huhlim / alphafold-multistate
  ☆42Updated last year
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆165Updated last month
• Kortemme-Lab / flex_ddG_tutorial
  ☆139Updated 3 years ago
• Kuhlman-Lab / evopro
  ☆94Updated 3 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆118Updated 10 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆66Updated 11 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆118Updated 2 months ago
• ai4protein / Pro-Prime
  ☆77Updated 5 months ago
• Mingchenchen / PPIFlow
  de novo design of high affinity biological binders
  ☆114Updated this week
• Alex-Abrudan / DynamicMPNN
  ☆42Updated 6 months ago