Maine-eDNA / medna-metadata
An open-source data management system for tracking environmental DNA samples and metadata
☆13Updated 5 months ago
Alternatives and similar repositories for medna-metadata:
Users that are interested in medna-metadata are comparing it to the libraries listed below
- eDNA metabarcoding pipeline☆31Updated last month
- ☆20Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated 2 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆39Updated 3 months ago
- functions for analyzing phyloseq data☆26Updated last week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Look Up Guild Information for Fungi in R☆19Updated last year
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆13Updated 2 months ago
- Speedy versions of phyloseq functions☆46Updated 8 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- JAMP - Just Another Metabarcoding Pipeline☆32Updated 3 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆15Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- the hierfstat package☆24Updated last month
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆27Updated 6 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated this week
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆18Updated this week
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆18Updated last year
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- Metagenomic Analysis in Real Time☆19Updated this week
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆19Updated 2 years ago