Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
☆127Dec 19, 2025Updated 3 months ago
Alternatives and similar repositories for AMICO
Users that are interested in AMICO are comparing it to the libraries listed below
Sorting:
- Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI☆49Mar 9, 2026Updated last week
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆118Dec 4, 2024Updated last year
- Gray-matter Based Spatial Statistics☆23Apr 19, 2023Updated 2 years ago
- Optimized cerebral cortical surface mapping of neurite properties using diffsion magnetic resonace imaging (dMRI)☆15May 16, 2023Updated 2 years ago
- Microscopic diffusion anisotropy imaging made easy!☆28Jan 14, 2019Updated 7 years ago
- U fiber analysis: a toolbox for automated quantification of U-fibers and white matter hyperintensities☆12Dec 15, 2025Updated 3 months ago
- A Tractography Tool for Diffusion MRI☆153Updated this week
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆342Mar 13, 2026Updated last week
- ☆18May 6, 2021Updated 4 years ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Mar 5, 2024Updated 2 years ago
- mrQ_BoxJoinBox☆23Sep 27, 2023Updated 2 years ago
- Microstructure Diffusion Toolbox☆60Mar 4, 2024Updated 2 years ago
- MATLAB code for Multidimensional Diffusion MRI☆50Oct 13, 2025Updated 5 months ago
- Peak width of Skeletonized Mean Diffusivity (PSMD)☆15Nov 27, 2025Updated 3 months ago
- Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization☆176Dec 15, 2025Updated 3 months ago
- Bash script to compute DTI-ALPS☆73Sep 12, 2025Updated 6 months ago
- Processing pipelines for the HCP☆636Updated this week
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- The Monte Carlo Diffusion and Collision simulator (MC/DC), is a C++ open-source Diffusion-Weighted Magnetic Resonance Imaging (DW-MRI) Mo…☆26May 9, 2025Updated 10 months ago
- q-space: multishell sampling and continuous reconstruction of diffusion signal☆20Jan 23, 2026Updated last month
- Automatic White Matter Bundle Segmentation☆255Feb 23, 2026Updated 3 weeks ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆85Jul 31, 2025Updated 7 months ago
- precon_all surface pipline☆29Dec 19, 2025Updated 3 months ago
- Patch2Self Denoising - NeurIPS 2020 Spotlight Presentation☆26Jul 7, 2025Updated 8 months ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated last month
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆17May 22, 2024Updated last year
- Preprocessing of diffusion MRI☆178Mar 13, 2026Updated last week
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆174Jan 15, 2026Updated 2 months ago
- parallel FSL processing without requiring SGE☆28Sep 3, 2021Updated 4 years ago
- dMRI based fiber tracking using parallel transport tractography☆29Dec 19, 2025Updated 3 months ago
- Automated Fiber Quantification☆77Mar 6, 2024Updated 2 years ago
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆810Mar 12, 2026Updated last week
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆96Mar 13, 2026Updated last week
- Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroim…☆14Apr 12, 2019Updated 6 years ago
- Support for CMRR multi-band pulse sequences☆60Mar 10, 2025Updated last year
- Create realistic digital phantoms in diffusion MRI.☆41Jul 4, 2023Updated 2 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Feb 14, 2026Updated last month
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆31Jul 24, 2025Updated 7 months ago
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year