Alternatives and similar repositories for HCPpipelines

Users that are interested in HCPpipelines are comparing it to the libraries listed below

• ThomasYeoLab / CBIG
  ☆638Updated last week
• nipreps / mriqc
  Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  ☆320Updated this week
• nipreps / fmriprep
  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…
  ☆671Updated last week
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆175Updated 2 weeks ago
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆253Updated this week
• MRtrix3 / mrtrix3
  MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …
  ☆312Updated this week
• Jfortin1 / ComBatHarmonization
  Harmonization of multi-site imaging data with ComBat
  ☆290Updated last year
• MICA-MNI / BrainSpace
  BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…
  ☆216Updated 3 months ago
• Washington-University / workbench
  Connectome Workbench
  ☆200Updated last week
• andrewjahn / AndysBrainBook
  This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
  ☆192Updated this week
• bids-standard / bids-examples
  A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
  ☆190Updated last month
• bids-standard / bids-starter-kit
  The Starter-kit has moved to the new BIDS website.
  ☆265Updated 2 months ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆139Updated this week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆154Updated 2 weeks ago
• netneurolab / neuromaps
  A toolbox for comparing brain maps
  ☆277Updated 3 weeks ago
• canlab / CanlabCore
  Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analy…
  ☆154Updated this week
• afni / afni
  Official AFNI source and documentation
  ☆170Updated this week
• nipy / nipype
  Workflows and interfaces for neuroimaging packages
  ☆782Updated 2 weeks ago
• bids-standard / bids-specification
  Brain Imaging Data Structure (BIDS) Specification
  ☆307Updated last week
• bids-standard / pybids
  Python tools for querying and manipulating BIDS datasets.
  ☆237Updated 2 weeks ago
• aestrivex / bctpy
  brain connectivity toolbox for python
  ☆312Updated last year
• bids-standard / legacy-validator
  Validator for the Brain Imaging Data Structure
  ☆186Updated this week
• MIC-DKFZ / TractSeg
  Automatic White Matter Bundle Segmentation
  ☆239Updated last year
• nipy / nipy
  Neuroimaging in Python FMRI analysis package
  ☆390Updated 4 months ago
• freesurfer / freesurfer
  Neuroimaging analysis and visualization suite
  ☆675Updated this week
• neurodata / neuroparc
  ☆179Updated last year
• Donders-Institute / bidscoin
  BIDScoin converts your source-level neuroimaging data to BIDS
  ☆138Updated 3 weeks ago
• yetianmed / subcortex
  ☆115Updated 3 weeks ago
• miykael / nipype_tutorial
  Learn Nipype with these tutorial notebooks - go here to see them online -->
  ☆122Updated last year
• noahbenson / neuropythy
  A neuroscience library for Python, intended to complement the existing nibabel library.
  ☆124Updated 3 months ago