Processing pipelines for the HCP
☆648Jun 11, 2026Updated this week
Alternatives and similar repositories for HCPpipelines
Users that are interested in HCPpipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆746Mar 25, 2026Updated 2 months ago
- Connectome Workbench☆223Updated this week
- The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets☆132Nov 8, 2022Updated 3 years ago
- MATLAB code for reading and writing CIFTI connectivity files☆71Feb 25, 2026Updated 3 months ago
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆737Jun 1, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆150Jul 5, 2025Updated 11 months ago
- A BIDS App for minimal preprocessing using the HCP Pipelines☆37Mar 16, 2026Updated 2 months ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆43Jul 21, 2022Updated 3 years ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆250Updated this week
- Flexible DICOM conversion into structured directory layouts☆280Jun 8, 2026Updated last week
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆351Updated this week
- Workflows and interfaces for neuroimaging packages☆826Jun 8, 2026Updated last week
- Utilities to use HCP and HCP-like data with nilearn and other Python tools☆52Apr 29, 2023Updated 3 years ago
- The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface …☆179Jan 15, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆220Jun 23, 2023Updated 2 years ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆166Jun 1, 2026Updated last week
- Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)☆87Feb 8, 2021Updated 5 years ago
- Configurable Pipeline for the Analysis of Connectomes☆81Oct 31, 2025Updated 7 months ago
- micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…☆120May 6, 2026Updated last month
- Automated Fiber Quantification☆77Mar 6, 2024Updated 2 years ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆366Jan 28, 2026Updated 4 months ago
- MATLAB/Octave GIfTI Library☆28Mar 10, 2025Updated last year
- ☆109Jul 23, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆200Updated this week
- The Midnight Scanning Club Codebase☆41Jun 26, 2019Updated 6 years ago
- Neuroimaging analysis and visualization suite☆847Updated this week
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆88Jul 31, 2025Updated 10 months ago
- Preprocessing of diffusion MRI☆183Jun 8, 2026Updated last week
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆662Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆76Feb 14, 2026Updated 4 months ago
- A neuroscience library for Python, intended to complement the existing nibabel library.☆135Oct 14, 2025Updated 8 months ago
- Cortical neuroimaging visualization in Python☆253Dec 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute☆84May 9, 2025Updated last year
- Automatic White Matter Bundle Segmentation☆262Feb 23, 2026Updated 3 months ago
- PALM: Permutation Analysis of Linear Models☆83Jun 8, 2026Updated last week
- ☆54Oct 26, 2025Updated 7 months ago
- GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…☆135Apr 27, 2026Updated last month
- Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data☆128Dec 19, 2025Updated 5 months ago
- Script-framework using FSL, Freesurfer and AFNI functionality for automatization and high-throughput processing of MRI data in clustered …☆38Mar 12, 2017Updated 9 years ago