Automatic White Matter Bundle Segmentation
☆253Updated this week
Alternatives and similar repositories for TractSeg
Users that are interested in TractSeg are comparing it to the libraries listed below
Sorting:
- White matter tractography clustering and more...☆80Jun 13, 2025Updated 8 months ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆94Feb 18, 2026Updated last week
- TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity☆63Sep 23, 2024Updated last year
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆118Dec 4, 2024Updated last year
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆340Updated this week
- Automated Fiber Quantification☆77Mar 6, 2024Updated last year
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- [MICCAI 2019] Official implementation of the paper "DeepTract: A Probabilistic Deep Learning Framework for White Matter Fiber Tractograph…☆17Mar 30, 2020Updated 5 years ago
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆102Updated this week
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- ORG Fiber Clustering White Matter Atlas☆31Oct 18, 2025Updated 4 months ago
- Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge☆18Dec 9, 2022Updated 3 years ago
- ISBI 2023 - A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation with Only One Annotated Subject☆10Sep 10, 2023Updated 2 years ago
- A Tractography Tool for Diffusion MRI☆152Updated this week
- A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…☆30Sep 9, 2025Updated 5 months ago
- "DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation".☆19May 1, 2023Updated 2 years ago
- Research work about learning to do tracking.☆13Jun 28, 2019Updated 6 years ago
- Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning☆26Feb 4, 2026Updated 3 weeks ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆84Jul 31, 2025Updated 7 months ago
- Convert tractography studies from mrtrix into dicom for use in navigation software☆17Mar 1, 2025Updated last year
- Preprocessing of diffusion MRI☆178Feb 19, 2026Updated last week
- MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.☆18Apr 5, 2024Updated last year
- PyTorch implementation of FastSurferCNN☆583Updated this week
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆33Dec 19, 2025Updated 2 months ago
- Multi-site dMRI harmonization☆49May 14, 2025Updated 9 months ago
- Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data☆126Dec 19, 2025Updated 2 months ago
- Processing pipelines for the HCP☆635Feb 16, 2026Updated last week
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆20Oct 28, 2025Updated 4 months ago
- [MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learn…☆24Jul 21, 2023Updated 2 years ago
- MRI brain extraction tool☆398Dec 18, 2024Updated last year
- Linear framework to combine tractography and tissue microstructure estimation with diffusion MRI☆47Feb 3, 2026Updated 3 weeks ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Mar 5, 2024Updated last year
- Contrast-agnostic segmentation of MRI scans☆534Jul 17, 2024Updated last year
- Peak width of Skeletonized Mean Diffusivity (PSMD)☆15Nov 27, 2025Updated 3 months ago
- Toolbox for parameter estimation of the Standard Model of diffusion in white matter☆28Jun 24, 2025Updated 8 months ago
- Toolbox for structural and functional brain connectivity reconstruction.☆18Oct 21, 2024Updated last year
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2☆31Updated this week
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆243Feb 9, 2026Updated 2 weeks ago
- FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution☆27Apr 26, 2022Updated 3 years ago