Alternatives and similar repositories for MRtrix3Tissue

Users that are interested in MRtrix3Tissue are comparing it to the libraries listed below

• pnlbwh / TBSS
  Tract based spatial statistics using ANTs and FSL
  ☆17Updated 10 months ago
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• mjallais / uGUIDE
  ☆26Updated 9 months ago
• NotaCS / Functionnectome
  Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.
  ☆35Updated last year
• cmig-research-group / cmig_tools_deprecated
  Public repository of cmig_tools including FEMA
  ☆24Updated last year
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆72Updated 4 months ago
• pGarciaS / PREEMACS
  PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface
  ☆17Updated last year
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆58Updated last week
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆62Updated last year
• isebenius / MIND
  This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…
  ☆49Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆77Updated last week
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆73Updated 3 months ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆73Updated last month
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆49Updated this week
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆73Updated 2 weeks ago
• mvgolub / FW-DTI-Beltrami
  ☆13Updated 2 years ago
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆28Updated last month
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆111Updated last week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆78Updated 4 years ago
• netneurolab / abagen
  A toolbox for working with Allen Human Brain Atlas microarray expression data
  ☆14Updated last year
• Macatools / macapype
  PNH segmentation pipelines based on nipype
  ☆24Updated last week
• ysu001 / PUP
  PET Unified Pipeline
  ☆24Updated 5 years ago
• neurabenn / precon_all
  precon_all surface pipline
  ☆29Updated last month
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆84Updated 6 months ago
• vzachari / IronSmithQSM
  Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…
  ☆25Updated 2 years ago
• isdneuroimaging / psmd
  Peak width of Skeletonized Mean Diffusivity (PSMD)
  ☆15Updated 2 months ago
• DiedrichsenLab / cerebellar_atlases
  ☆46Updated 3 months ago
• predictive-clinical-neuroscience / braincharts
  ☆40Updated 7 months ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆44Updated last month
• wwu-mmll / deepbet
  Fast brain extraction using neural networks
  ☆50Updated last year