Alternatives and similar repositories for scilpy

Users that are interested in scilpy are comparing it to the libraries listed below

• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 10 months ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆105Updated 6 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆62Updated this week
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆27Updated last month
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated this week
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated 2 weeks ago
• BioMedIA / dhcp-structural-pipeline
  structural analysis of neonatal brain MRI scans
  ☆53Updated 3 years ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆76Updated 2 months ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆52Updated last year
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆66Updated last year
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆25Updated 3 months ago
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆72Updated 10 months ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆64Updated 2 years ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆154Updated last month
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆48Updated 3 weeks ago
• yu02019 / BEN
  ☆29Updated last year
• thalamicseg / thomas_new
  Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…
  ☆23Updated 3 months ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆97Updated 9 months ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 6 months ago
• mjallais / uGUIDE
  ☆22Updated 3 weeks ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 6 months ago
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆48Updated this week
• pBFSLab / FastCSR
  ☆28Updated last year
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆41Updated 2 weeks ago
• HumanBrainED / NHP-BrainExtraction
  ☆38Updated 3 years ago
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆38Updated 2 years ago
• Diffusion-MRI / awesome-preclinical-diffusion-mri
  ☆17Updated last year
• ecaruyer / phantomas
  Create realistic digital phantoms in diffusion MRI.
  ☆34Updated last year
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆58Updated 2 years ago