dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
☆1,210Nov 6, 2026Updated this week
Alternatives and similar repositories for dcm2niix
Users that are interested in dcm2niix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆403Jun 23, 2025Updated last year
- Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure☆210Oct 26, 2026Updated 2 weeks ago
- Flexible DICOM conversion into structured directory layouts☆287Oct 5, 2026Updated last month
- fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual interv…☆763Updated this week
- Advanced Normalization Tools (ANTs)☆1,512Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.☆296Nov 23, 2025Updated 11 months ago
- Neuroimaging analysis and visualization suite☆886Updated this week
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆891Updated this week
- DICOM to NIfTI conversion, NIfTI tools☆104Oct 14, 2026Updated 3 weeks ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆383Updated this week
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆359Updated this week
- BIDScoin converts your source-level neuroimaging data to BIDS☆162Oct 22, 2026Updated 3 weeks ago
- Workflows and interfaces for neuroimaging packages☆837Nov 2, 2026Updated last week
- Python package to access a cacophony of neuro-imaging file formats☆810Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a WebGL2 based medical image viewer. Supports over 30 formats of volumes and meshes.☆506Oct 6, 2026Updated last month
- PyTorch implementation of FastSurferCNN☆649Updated this week
- Processing pipelines for the HCP☆663Updated this week
- defacing utility for MRI images☆142Updated this week
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆169Nov 3, 2026Updated last week
- Tool for robust segmentation of >100 important anatomical structures in CT and MR images☆3,139Nov 4, 2026Updated last week
- Generate custom Docker and Singularity images, and minimize existing containers☆362Nov 1, 2026Updated last week
- Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.sl…☆1,467Oct 27, 2025Updated last year
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆262Oct 24, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MRI brain extraction tool☆439Dec 18, 2024Updated last year
- dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representa…☆282Oct 26, 2026Updated 2 weeks ago
- Preprocessing of arterial spin labeling (ASL) data☆66Updated this week
- Contrast-agnostic segmentation of MRI scans☆590Jul 17, 2024Updated 2 years ago
- Preprocessing of diffusion MRI☆197Updated this week
- Validator for the Brain Imaging Data Structure☆185Dec 11, 2025Updated 11 months ago
- Python tools for querying and manipulating BIDS datasets.☆272Updated this week
- Brain Imaging Data Structure (BIDS) Specification☆375Updated this week
- Official AFNI source and documentation☆196Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆854Updated this week
- GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…☆138Apr 27, 2026Updated 6 months ago
- niimath - a clone of fslmaths. Try the live demo:☆85Oct 26, 2026Updated 2 weeks ago
- SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, educati…☆1,096Updated this week
- Utility functions for working with DICOM and BIDS neuroimaging data☆65May 29, 2026Updated 5 months ago
- ☆9,035Updated this week
- Read, modify and write DICOM files with python code☆2,237Updated this week
Are these results useful?