LiuLab-Bioelectronics-Harvard / STAgentLinks
STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data
☆32Updated 2 weeks ago
Alternatives and similar repositories for STAgent
Users that are interested in STAgent are comparing it to the libraries listed below
Sorting:
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆79Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆34Updated last month
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆62Updated 11 months ago
- End-to-end analysis of spatial multi-omics data☆76Updated 2 months ago
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆30Updated last year
- ☆98Updated 3 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆48Updated 4 months ago
- Learning cell communication from spatial graphs of cells☆110Updated last year
- ☆48Updated 2 weeks ago
- Spatial-Linked Alignment Tool☆86Updated 5 months ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 2 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆57Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- Accessible and interoperable whole slide image analysis☆71Updated this week
- Tissue reassembly with generative AI☆15Updated 2 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆59Updated this week
- ☆52Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆117Updated 9 months ago
- ☆55Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆66Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆223Updated this week
- ☆55Updated 2 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆29Updated 3 weeks ago
- ☆36Updated last week
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆85Updated last year
- Single-cell multi-omics integration using Optimal Transport☆44Updated 9 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆65Updated 2 years ago
- ☆44Updated 3 months ago
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆19Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆123Updated last week