LiuLab-Bioelectronics-Harvard / STAgentLinks
STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data
☆45Updated 7 months ago
Alternatives and similar repositories for STAgent
Users that are interested in STAgent are comparing it to the libraries listed below
Sorting:
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- Spatially resolved transcriptomic analysis☆64Updated 3 years ago
- ☆121Updated 10 months ago
- Reproducing the experiments of the DestVI paper☆22Updated 3 years ago
- ☆52Updated 3 months ago
- ☆57Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆70Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆107Updated this week
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆76Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 7 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆67Updated 2 months ago
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆71Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 7 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- 🏃 The go-to single-cell Foundation Model☆127Updated 3 weeks ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated 7 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆107Updated last month
- Multigrate: multiomic data integration for single-cell genomics☆30Updated 2 weeks ago
- ☆60Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated last month
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆91Updated last year
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆11Updated 4 months ago
- ☆60Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- data for spacejam2☆18Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago