LeidenCBC / MGC-BioSB-SingleCellAnalysis2020
☆19Updated 4 years ago
Alternatives and similar repositories for MGC-BioSB-SingleCellAnalysis2020:
Users that are interested in MGC-BioSB-SingleCellAnalysis2020 are comparing it to the libraries listed below
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆68Updated 9 months ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- ☆46Updated 3 weeks ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆70Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- 🧬 Gene analysis toolkit based on R☆55Updated 3 weeks ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆53Updated 4 years ago
- ☆45Updated 11 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆45Updated last month
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- Multiscale embedded gene co-expression network analysis☆49Updated last year
- Identify and correct invalid gene symbols☆57Updated 2 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆32Updated 2 years ago
- ☆43Updated 6 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago