Alternatives and similar repositories for pyvenn

Users that are interested in pyvenn are comparing it to the libraries listed below

• LankyCyril / pyvenn
  Python module for plotting Venn diagrams of 2..6 sets
  ☆129Updated 3 years ago
• jnothman / UpSetPlot
  Draw UpSet plots with Matplotlib
  ☆365Updated last year
• guma44 / GEOparse
  Python library to access Gene Expression Omnibus Database (GEO)
  ☆155Updated last year
• ImSoErgodic / py-upset
  A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
  ☆319Updated 7 years ago
• reneshbedre / bioinfokit
  Bioinformatics data analysis and visualization toolkit
  ☆358Updated last year
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆94Updated 8 months ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆247Updated 5 months ago
• BaselAbujamous / clust
  Automatic and optimised consensus clustering of one or more heterogeneous datasets
  ☆166Updated 2 years ago
• konstantint / matplotlib-venn
  Area-weighted venn-diagrams for Python/matplotlib
  ☆559Updated 7 months ago
• KrishnaswamyLab / PHATE
  PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
  ☆524Updated 2 weeks ago
• Marsilea-viz / marsilea
  Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
  ☆289Updated this week
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated 2 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆489Updated 2 weeks ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆400Updated last week
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆234Updated 8 months ago
• cytoscape / cytoscape-automation
  Collection of scripts that include programmatic io and control of Cytoscape
  ☆88Updated 7 months ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆158Updated 2 weeks ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• open2c / bioframe
  Genomic interval operations on Pandas DataFrames
  ☆183Updated last week
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆202Updated 4 months ago
• gecko984 / supervenn
  supervenn: precise and easy-to-read multiple sets visualization in Python
  ☆353Updated 10 months ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆229Updated last month
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 7 months ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆302Updated this week
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆266Updated 7 months ago
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆313Updated 2 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆152Updated 3 weeks ago
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆131Updated last year
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆148Updated this week