tanjimin / CANVASLinks
Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging data
☆14Updated last month
Alternatives and similar repositories for CANVAS
Users that are interested in CANVAS are comparing it to the libraries listed below
Sorting:
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated 5 months ago
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆16Updated 4 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆32Updated 4 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆82Updated last year
- ☆190Updated last week
- multimodal whole slide image registration in a graph structure☆95Updated last year
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆36Updated last month
- ☆108Updated 11 months ago
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆36Updated 7 months ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆108Updated 9 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆56Updated last year
- Cloud-based data annotation tools for biological images☆82Updated last year
- ☆20Updated 4 months ago
- Segment Anything Model API☆102Updated last year
- Hibou: Foundational Models for Pathology☆74Updated last year
- ☆155Updated 3 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆122Updated 2 months ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆40Updated 2 months ago
- ☆23Updated 7 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- Accessible and interoperable whole slide image analysis☆150Updated 2 weeks ago
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated 2 months ago
- ☆55Updated 8 months ago
- Your Personal Assistant in Computational Bioimaging.☆45Updated 7 months ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆222Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆62Updated last year
- Powerful, open-source AI tools for digital pathology.☆333Updated last month
- GrandQC tool for tissue detection and quality control in pathology☆74Updated 8 months ago
- An open-source digital pathology based rapid image annotation tool☆86Updated this week
- Virtual Alignment of pathoLogy Image Series☆186Updated 4 months ago