mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images
☆41Jan 10, 2025Updated last year
Alternatives and similar repositories for mclSTExp
Users that are interested in mclSTExp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16May 27, 2024Updated last year
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 10 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆21Jul 24, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆26Dec 1, 2025Updated 5 months ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 10 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 8 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 10 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 6 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆19Nov 27, 2025Updated 5 months ago
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆50May 19, 2025Updated 11 months ago
- [PR 2025] Code for UMPIRE☆13Mar 10, 2025Updated last year
- ☆13May 28, 2025Updated 11 months ago
- ☆54Apr 26, 2022Updated 4 years ago
- ☆87May 13, 2025Updated 11 months ago
- PyTorch implementation of HisToGene☆54Nov 30, 2021Updated 4 years ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆34Updated this week
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆86Oct 22, 2024Updated last year
- Deep learning on histopathology images.☆145Sep 8, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Her2 Breast Cancer Project☆98Nov 27, 2022Updated 3 years ago
- ☆30Mar 15, 2024Updated 2 years ago
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆396Apr 16, 2026Updated 2 weeks ago
- ☆56Mar 28, 2025Updated last year
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆48Apr 15, 2025Updated last year
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆17May 19, 2025Updated 11 months ago
- [MICCAI 2024] Official Repo of "HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context Inter…☆86Dec 23, 2024Updated last year
- [AAAI 2025] M2OST: Many-to-one Regression for Predicting Spatial Transcriptomics from Digital Pathology Images☆14Dec 1, 2025Updated 5 months ago
- [ECCV 2024] Official Implementation of 《WSI-VQA: Interpreting Whole Slide Image by Generative Question Answering》☆65Dec 18, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆69Sep 16, 2025Updated 7 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆32Aug 11, 2025Updated 8 months ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated last year
- Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology (ICLR 2025)☆70May 5, 2025Updated last year
- ☆23Apr 3, 2025Updated last year
- ☆31Jun 18, 2025Updated 10 months ago
- ☆132Apr 11, 2024Updated 2 years ago