Alternatives and similar repositories for bioscrape

Users that are interested in bioscrape are comparing it to the libraries listed below

• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆29Updated 3 months ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• Global-Biofoundries-Alliance / DNA-scanner
  Online tool for comparing prices and feasibility of DNA synthesis
  ☆20Updated 2 years ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆24Updated 2 years ago
• benchling / clustalo-python
  A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
  ☆25Updated 3 years ago
• 3D-e-Chem / 3D-e-Chem-VM
  Virtual machine with all software and sample data to run 3D-e-Chem Knime workflows
  ☆17Updated 6 years ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• normandavey / ProcessedAlphafold
  ☆31Updated 3 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆35Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• Lattice-Automation / synbio
  a DNA assembly library
  ☆22Updated last year
• lightdock / lightdock-python2.7
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆24Updated 5 years ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆33Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• BuildACell / bioCRNpyler
  A modular compiler for biological chemical reaction networks
  ☆47Updated last month
• BASIC-DNA-ASSEMBLY / DNA-BOT
  ☆24Updated this week
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 2 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆117Updated 2 years ago
• groponp / CompBiology-Biophysics
  It's an general repository containing multiple script for several task into computational biophysics or biology.
  ☆10Updated last year
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• rcsb / mmtf-python
  The python implementation of the MMTF API, decoder and encoder.
  ☆46Updated 3 years ago
• gmiaslab / mathiomica
  MathIOmica is a Mathematica package for omics data analyses
  ☆12Updated last year
• dhimmel / lincs
  Library of Integrated Cellular Signatures L1000
  ☆31Updated 3 years ago
• jgreener64 / pdb-benchmarks
  Benchmarking common tasks on proteins in various languages and packages
  ☆42Updated 4 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 3 months ago
• brianhie / mutational-semantics-neurips2020
  Learning mutational semantics
  ☆10Updated 4 years ago
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated 2 years ago
• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆68Updated 2 years ago