Alternatives and similar repositories for QBioCode

Users that are interested in QBioCode are comparing it to the libraries listed below

• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 6 months ago
• czi-ai / transcriptformer
  ☆100Updated 2 months ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated last week
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆123Updated 4 months ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆60Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆67Updated 9 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆100Updated 10 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆91Updated 2 weeks ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆170Updated 3 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆91Updated 2 months ago
• bm2-lab / DeepCRISPR
  ☆72Updated 2 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆34Updated last year
• open2c / polychrom
  Chromosome polymer simulations and in silico capture experiments
  ☆54Updated 2 months ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆261Updated last week
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆56Updated 6 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆56Updated 2 years ago
• kundajelab / DART-Eval
  ☆42Updated this week
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆132Updated last year
• helicalAI / helical
  A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
  ☆187Updated last month
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆314Updated 2 weeks ago
• ML4GLand / EUGENe
  Elucidating the Utility of Genomic Elements with Neural Nets
  ☆69Updated last year
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆157Updated last week
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆86Updated 4 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆89Updated 3 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆58Updated 3 years ago
• snap-stanford / SATURN
  ☆154Updated last year
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆290Updated 7 months ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆58Updated this week