HumanCellAtlas / data-consumer-vignettesLinks
Simple walk-throughs of interacting with the DCP as a downstream data consumer.
☆17Updated last week
Alternatives and similar repositories for data-consumer-vignettes
Users that are interested in data-consumer-vignettes are comparing it to the libraries listed below
Sorting:
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated last month
- ☆62Updated 3 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- Create QC and summary reports for Alevin output☆32Updated 2 months ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Utilities for large scale distributed single cell data processing☆24Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 3 months ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Identify and correct invalid gene symbols☆58Updated 7 months ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- ☆19Updated 7 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago