HumanCellAtlas / data-consumer-vignettes
Simple walk-throughs of interacting with the DCP as a downstream data consumer.
☆17Updated last month
Alternatives and similar repositories for data-consumer-vignettes:
Users that are interested in data-consumer-vignettes are comparing it to the libraries listed below
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 5 years ago
- Utilities for large scale distributed single cell data processing☆23Updated 6 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last week
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- ☆62Updated 2 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Create QC and summary reports for Alevin output☆31Updated last month
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆52Updated 9 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆53Updated 3 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆69Updated 9 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last month