HumanCellAtlas / data-consumer-vignettesLinks
Simple walk-throughs of interacting with the DCP as a downstream data consumer.
☆17Updated last month
Alternatives and similar repositories for data-consumer-vignettes
Users that are interested in data-consumer-vignettes are comparing it to the libraries listed below
Sorting:
- Utilities for large scale distributed single cell data processing☆24Updated 4 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 8 months ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A rust framework to make using alevin-fry even simpler☆60Updated 6 months ago
- ☆55Updated 8 months ago
- cyclone☆19Updated 10 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago