Alternatives and similar repositories for tofu

Users that are interested in tofu are comparing it to the libraries listed below

• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆54Updated 2 years ago
• spiros / phemap
  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
  ☆37Updated 2 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆36Updated 4 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆26Updated 4 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆49Updated last year
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 10 months ago
• PhilAppleby / ukbb-srmed
  Text matching UK Biobank Self-Reported medication descriptions for medication classification
  ☆27Updated 3 years ago
• philipdarke / ukbb-ehr-data
  Prepare UK Biobank Electronic Health Record data for research
  ☆30Updated 3 years ago
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆29Updated 4 years ago
• nliulab / AutoScore
  AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator
  ☆33Updated 3 weeks ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• EHDEN / ETL-UK-Biobank
  ETL UK-Biobank
  ☆16Updated 2 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆21Updated 3 weeks ago
• spiros / hdr-caliber-phenotype-library
  HDR UK National Phenotype Library
  ☆22Updated 2 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• broadinstitute / ml4h
  ☆143Updated this week
• dsi-icl / biobank-read
  Python for UK Biobank data analysis
  ☆10Updated 9 months ago
• landiisotta / convae_architecture
  ☆41Updated 3 years ago
• insitro / EmbedGEM
  EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery
  ☆21Updated 11 months ago
• roux-ohdsi / allofus
  R package to streamline use of the AllofUs researcher workbench
  ☆17Updated 2 weeks ago
• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆22Updated 4 years ago
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆107Updated 2 years ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆47Updated 2 weeks ago
• ahmedmalaa / AutoPrognosis
  Codebase for "AutoPrognosis: Automated Clinical Prognostic Modeling via Bayesian Optimization", ICML 2018.
  ☆56Updated 4 years ago
• jiagengjie / Estimating-Genetic-Parameters
  ☆10Updated 4 years ago
• OHDSI / OMOP-Queries
  ☆29Updated 7 years ago
• miargentieri / exposome-aging-ukb
  R code and output repository for an exposome-wide association study of human aging in the UK Biobank
  ☆33Updated 4 months ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆41Updated 4 years ago
• all-of-us / ukb-cross-analysis-demo-project
  Workbench demo project: cross-analysis of AoU and UKB.
  ☆13Updated 2 years ago