Alternatives and similar repositories for tofu

Users that are interested in tofu are comparing it to the libraries listed below

• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆51Updated 2 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 4 years ago
• spiros / phemap
  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
  ☆35Updated 2 years ago
• PhilAppleby / ukbb-srmed
  Text matching UK Biobank Self-Reported medication descriptions for medication classification
  ☆25Updated 3 years ago
• spiros / docker-ukbiobank-utils
  Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
  ☆12Updated 3 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆24Updated 4 years ago
• saphir746 / BiobankRead-Bash
  Python scripts to extract and pre-process UKB data
  ☆32Updated 6 years ago
• spiros / hdr-caliber-phenotype-library
  HDR UK National Phenotype Library
  ☆22Updated 2 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆48Updated 11 months ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• nliulab / AutoScore
  AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator
  ☆33Updated 3 months ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆28Updated 4 years ago
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 7 months ago
• landiisotta / convae_architecture
  ☆40Updated 3 years ago
• broadinstitute / ml4h
  ☆136Updated last week
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆39Updated 3 years ago
• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆21Updated 4 years ago
• philipdarke / ukbb-ehr-data
  Prepare UK Biobank Electronic Health Record data for research
  ☆26Updated 2 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆108Updated 2 years ago
• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆105Updated 2 years ago
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆35Updated 7 months ago
• UK-Biobank / UKB-RAP-Notebooks-Access
  UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
  ☆100Updated last month
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆18Updated 8 months ago
• yeyixuan / UKBCaseFinder
  A tool for identifying patients in UK biobank given the definition of disease phenotypes (icd10, icd9, opcs or cancer histology).
  ☆20Updated 6 years ago
• ahmedmalaa / AutoPrognosis
  Codebase for "AutoPrognosis: Automated Clinical Prognostic Modeling via Bayesian Optimization", ICML 2018.
  ☆56Updated 4 years ago
• martonkolossvary / parseRPDR
  Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries
  ☆11Updated 5 months ago
• insitro / EmbedGEM
  EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery
  ☆21Updated 8 months ago
• ucam-department-of-psychiatry / UKB
  repository for scripts used in UK BioBank analyses
  ☆38Updated last year
• jasonHKU0907 / DementiaProteomicPrediction
  ☆44Updated 4 months ago