spiros / tofu
Tofu is a Python tool for generating synthetic UK Biobank data.
☆58Updated last year
Alternatives and similar repositories for tofu:
Users that are interested in tofu are comparing it to the libraries listed below
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆49Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆34Updated 2 years ago
- Python scripts to extract and pre-process UKB data☆31Updated 6 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆24Updated 3 years ago
- Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch☆12Updated 3 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆48Updated 10 months ago
- AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator☆32Updated 2 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- HDR UK National Phenotype Library☆22Updated 2 years ago
- ☆40Updated 3 years ago
- Prepare UK Biobank Electronic Health Record data for research☆26Updated 2 years ago
- https://celehs.github.io/PheCAP/☆21Updated 3 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 5 months ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 3 years ago
- Codebase for "AutoPrognosis: Automated Clinical Prognostic Modeling via Bayesian Optimization", ICML 2018.☆56Updated 4 years ago
- ☆132Updated this week
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆38Updated 3 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries☆11Updated 3 months ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆54Updated this week
- An R package to manipulate and explore UK Biobank data☆104Updated 2 years ago
- An R package for evaluating phenotype algorithms.☆17Updated 7 months ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆21Updated 7 months ago
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆93Updated last month
- R package to streamline use of the AllofUs researcher workbench☆16Updated 3 weeks ago
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆35Updated 5 months ago
- ☆29Updated 3 months ago