RyanWangZf / PyTrial
PyTrial: A Comprehensive Platform for Artificial Intelligence for Drug Development
☆97Updated last year
Alternatives and similar repositories for PyTrial:
Users that are interested in PyTrial are comparing it to the libraries listed below
- benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, p…☆121Updated 9 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆58Updated last year
- Code repository to create the MIMIC-CDM Dataset.☆29Updated 2 months ago
- Findings of EMNLP'22 | Trial2Vec: Zero-Shot Clinical Trial Document Similarity Search using Self-Supervision☆23Updated last year
- ☆61Updated 3 years ago
- The Clinical Trials Knowledge Graph☆57Updated 2 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- ☆33Updated last year
- source codes based on PyTorch to analyze EHR☆135Updated last year
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆23Updated 3 weeks ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated last year
- Code for paper "A deep learning framework for drug repurposing via emulating clinical trials on real world patient data" (Accepted to Nat…☆95Updated 3 years ago
- ☆65Updated last month
- A curated list of biomedical knowledge graphs and of resources for their construction.☆41Updated 6 months ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆35Updated 2 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆39Updated this week
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆38Updated 3 months ago
- The code for the paper "MediTab: Scaling Medical Tabular Data Predictors via Data Consolidation, Enrichment, and Refinement"☆20Updated 11 months ago
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆31Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Unified Clinical Vocabulary Embeddings for Advancing Precision Medicine☆52Updated 4 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆44Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆117Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆79Updated 2 years ago
- ICLR'24 | BioBridge: Bridging Biomedical Foundation Models via Knowledge Graphs☆69Updated 11 months ago
- Taking off-the-shelf HuggingFace models and training them on EHR data☆20Updated last month
- The JSON file for the ICD-9-CM and ICD-10-CM hierarchy, including diagnosis codes and procedure codes☆10Updated 2 years ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago