som-shahlab / aplusml
APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models
☆20Updated 5 months ago
Alternatives and similar repositories for aplusml:
Users that are interested in aplusml are comparing it to the libraries listed below
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆75Updated this week
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆43Updated this week
- Code for doing machine learning with various EHRs☆21Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standard☆25Updated 2 months ago
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆91Updated 7 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆41Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆106Updated last year
- Resources for the Society of Critical Care Medicine (SCCM) Datathon☆22Updated 3 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆120Updated last week
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆54Updated last year
- ACES: Automatic Cohort Extraction System for Event-Streams☆27Updated 3 weeks ago
- Code for BEHRT: Transformer for Electronic Health Records☆108Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆145Updated last month
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆18Updated last year
- ☆46Updated last month
- ☆28Updated 3 years ago
- ☆97Updated 3 years ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆108Updated last year
- Open source clinical text de-identification☆118Updated 4 months ago
- source codes based on PyTorch to analyze EHR☆132Updated 11 months ago
- Installing MIMIC-IV in a local Postgres database☆39Updated 3 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆28Updated 9 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆28Updated 7 years ago
- A community repository for MI_CLAIM (Minimum Information for CLinical AI Modeling) reporting standards☆24Updated 4 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆32Updated this week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated 2 months ago
- ☆38Updated 2 years ago
- Mapping the MIMIC-III database to the OMOP schema☆129Updated 10 months ago