som-shahlab / aplusml
APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models
☆21Updated last week
Alternatives and similar repositories for aplusml
Users that are interested in aplusml are comparing it to the libraries listed below
Sorting:
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆59Updated this week
- A collection of ETLs from common data formats to Medical Event Data Standard☆29Updated 3 weeks ago
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆76Updated last week
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆34Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆93Updated 11 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- Open source clinical text de-identification☆127Updated 8 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆62Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆170Updated this week
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated this week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆141Updated last month
- ☆15Updated 5 months ago
- ☆18Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆112Updated last year
- General tutorials for the setup and use of MedCAT.☆37Updated this week
- ☆12Updated this week
- A simple set of MEDS polars-based ETL and transformation functions☆30Updated this week
- Taking off-the-shelf HuggingFace models and training them on EHR data☆24Updated 2 months ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆36Updated last year
- source codes based on PyTorch to analyze EHR☆136Updated last year
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆12Updated 4 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆28Updated last year
- Tutorial repository for the official MOTOR release☆11Updated 2 months ago
- Python module to parse UMLS source files☆19Updated 2 years ago
- A version of MIMIC-IV in FHIR☆42Updated 6 months ago