som-shahlab / aplusmlLinks
APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models
☆25Updated 3 months ago
Alternatives and similar repositories for aplusml
Users that are interested in aplusml are comparing it to the libraries listed below
Sorting:
- Python package for machine learning for healthcare using a OMOP common data model☆111Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆89Updated 2 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆99Updated 7 months ago
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆96Updated 2 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆70Updated 7 months ago
- Code for doing machine learning with various EHRs☆22Updated 2 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 5 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆49Updated 2 years ago
- Open source clinical text de-identification☆147Updated last year
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆38Updated 5 months ago
- Winners of the SNOMED CT Entity Linking Challenge☆43Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆120Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆71Updated 8 months ago
- Python module to parse UMLS source files☆20Updated 2 years ago
- The new PhysioNet platform.☆74Updated this week
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆161Updated last week
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆123Updated 2 years ago
- A toolkit for evaluating and monitoring AI models in clinical settings☆87Updated last week
- ☆19Updated 6 months ago
- Mapping the MIMIC-III database to the OMOP schema☆143Updated last year
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆38Updated last year
- ☆29Updated 4 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆209Updated 7 months ago
- Tutorial repository for the official MOTOR release☆14Updated 11 months ago
- A version of MIMIC-IV in FHIR☆51Updated last year
- source codes based on PyTorch to analyze EHR☆149Updated 2 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated 3 weeks ago
- Biomedical concept relatedness benchmark sampled from electronic health records☆11Updated 3 years ago