nyuolab / NYUTronLinks
public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
☆118Updated 2 years ago
Alternatives and similar repositories for NYUTron
Users that are interested in NYUTron are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆64Updated 4 months ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆196Updated 4 months ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆47Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆156Updated last week
- Code for BEHRT: Transformer for Electronic Health Records☆116Updated 2 years ago
- Med-BERT, contextualized embedding model for structured EHR data☆307Updated last year
- Clinical text summarization by adapting large language models☆149Updated last year
- source codes based on PyTorch to analyze EHR☆147Updated last year
- ☆31Updated 2 years ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆135Updated last month
- ☆78Updated 7 months ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆85Updated 2 months ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆97Updated 5 months ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆96Updated 4 months ago
- Code repository to create the MIMIC-CDM Dataset.☆39Updated 8 months ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆109Updated last year
- ☆43Updated 2 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆86Updated 3 years ago
- all scripts used in gatortron project☆124Updated last year
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆39Updated 3 weeks ago
- Training HuggingFace models on EHR data☆30Updated 3 months ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆36Updated last year
- A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks☆162Updated 9 months ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆115Updated 3 months ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆44Updated 8 months ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆166Updated 7 months ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆70Updated last year
- ☆117Updated 2 years ago