nyuolab / NYUTronLinks
public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
☆113Updated last year
Alternatives and similar repositories for NYUTron
Users that are interested in NYUTron are comparing it to the libraries listed below
Sorting:
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last week
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆176Updated 3 weeks ago
- ☆72Updated 3 months ago
- source codes based on PyTorch to analyze EHR☆140Updated last year
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated this week
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last month
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- Training HuggingFace models on EHR data☆26Updated 3 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- ☆81Updated 2 years ago
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆33Updated last year
- Code for doing machine learning with various EHRs☆21Updated 2 years ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆106Updated 10 months ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆35Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆108Updated 2 years ago
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 2 weeks ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated 3 weeks ago
- Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records☆20Updated 2 years ago
- Dataset and modelling infrastructure for modelling "event streams": sequences of continuous time, multivariate events with complex intern…☆113Updated 3 months ago
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆72Updated this week
- Clinical text summarization by adapting large language models☆143Updated 10 months ago
- Resources for Machine Learning Explainability☆80Updated 9 months ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆38Updated 4 months ago
- ☆39Updated last year
- Tutorial repository for the official MOTOR release☆14Updated 4 months ago
- This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publicat…☆123Updated 2 years ago