refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).
☆20Jun 17, 2026Updated last week
Alternatives and similar repositories for refinegems
Users that are interested in refinegems are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated last month
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆26Feb 6, 2026Updated 4 months ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆29Mar 8, 2023Updated 3 years ago
- ☆14Aug 30, 2024Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆12Jun 9, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Mar 8, 2023Updated 3 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆14Aug 20, 2025Updated 10 months ago
- A simple python web app to visualise google location history☆16Jul 16, 2024Updated last year
- The funny insult device for everyday use.☆16May 10, 2026Updated last month
- Dual-core Multi-agent Learning Framework For EC Number Prediction☆21Nov 5, 2024Updated last year
- DeepECtransformer☆31Oct 20, 2023Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆51Mar 23, 2026Updated 3 months ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- ☆24Oct 11, 2024Updated last year
- ☆15May 8, 2026Updated last month
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Jan 26, 2026Updated 5 months ago
- 📱 💬 Plasmoid for KDE Connect allowing SMS sending from your desktop — KDE Plasma 6☆30Mar 26, 2026Updated 3 months ago
- Changelog & feature requests for IONOS Deploy Now☆18Jul 12, 2023Updated 2 years ago
- Android OTP Authenticator App for privacyIDEA Authentication Server☆14Jan 29, 2021Updated 5 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- Highly Optimized Polytope Sampling☆13Mar 10, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 2 months ago
- Framework for Object Oriented Modelling of Bioprocesses☆18Feb 18, 2021Updated 5 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆32Mar 5, 2019Updated 7 years ago
- Symbolic (analytical) polyhedron projection by Fourier-Motzkin elimination using SymPy☆11Oct 17, 2019Updated 6 years ago
- Collection of resources from each meetup event☆13Nov 26, 2020Updated 5 years ago
- ☆28May 12, 2026Updated last month
- MaxEnt code for fitting simulation outcomes/statistical models to observations☆18Jun 28, 2022Updated 4 years ago
- ☆19Jul 3, 2022Updated 3 years ago
- R Package growthrates☆28Aug 28, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- JBEI Quantitative Metabolic Modeling library☆13Feb 7, 2020Updated 6 years ago
- 🏍️ - JAX-based framework to model biological systems☆17Jun 21, 2026Updated last week
- nbgrader sharing service☆20Sep 17, 2025Updated 9 months ago
- Unified knowledge-driven network inference from omics data☆104Jun 14, 2026Updated 2 weeks ago
- ☆24Oct 19, 2023Updated 2 years ago
- ☆16Feb 2, 2022Updated 4 years ago
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year