Alternatives and similar repositories for TOPCONS2

Users that are interested in TOPCONS2 are comparing it to the libraries listed below

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆68Updated 7 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆58Updated 4 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆52Updated last month
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆91Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆59Updated last month
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 8 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆62Updated 5 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 3 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆26Updated 5 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆52Updated 10 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆101Updated last month
• JudeWells / chainsaw
  ☆43Updated 11 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆104Updated 4 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆111Updated 4 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆17Updated 6 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 8 months ago
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 7 months ago
• lasersonlab / pepsyn
  Peptide library design
  ☆23Updated 4 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• proteinphysiologylab / frustratometeR
  ☆36Updated 2 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago