Alternatives and similar repositories for pyCircos

Users that are interested in pyCircos are comparing it to the libraries listed below

• reneshbedre / bioinfokit
  Bioinformatics data analysis and visualization toolkit
  ☆357Updated last year
• DingWB / PyComplexHeatmap
  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
  ☆344Updated last month
• Marsilea-viz / marsilea
  Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
  ☆278Updated this week
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆260Updated 6 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆483Updated 5 months ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆229Updated 2 weeks ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆246Updated 4 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆338Updated 2 months ago
• ponnhide / pyCircos-examples
  Example notebooks of pyCircos
  ☆29Updated 3 years ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆138Updated 2 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆396Updated 2 weeks ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆299Updated 3 weeks ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆398Updated 3 months ago
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆354Updated this week
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆263Updated last month
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆650Updated this week
• snakemake / snakemake-wrappers
  This is the development home of the Snakemake wrapper repository, see
  ☆232Updated this week
• igvteam / igv-reports
  Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
  ☆374Updated 2 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆835Updated last year
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆278Updated 3 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆344Updated last year
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆285Updated 8 months ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆111Updated 3 weeks ago
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆161Updated last year
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆584Updated last year
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆216Updated last month
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆233Updated 7 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆429Updated 8 months ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆165Updated 3 months ago
• open2c / cooler
  A cool place to store your Hi-C
  ☆223Updated this week