python functions for simulating optical transfer functions
☆82Apr 8, 2024Updated last year
Alternatives and similar repositories for pyotf
Users that are interested in pyotf are comparing it to the libraries listed below
Sorting:
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- ☆12May 4, 2023Updated 2 years ago
- A convex 3D deconvolution algorithm for low photon count fluorescence imaging☆33Feb 9, 2022Updated 4 years ago
- Information driven structured illumination microscopy using noise-controlled image reconstructions☆13Apr 16, 2021Updated 4 years ago
- GPU accelerated beam propagation tools for biological light tissue simulations☆38Sep 29, 2018Updated 7 years ago
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆32Oct 2, 2024Updated last year
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆48Oct 28, 2025Updated 4 months ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 4 years ago
- CUDA-accelerated reconstruction for 3D-structured-illumination☆12Nov 24, 2025Updated 3 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- SLM binary mask generator for Lattice Light Sheet microscopy☆12Dec 2, 2021Updated 4 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Mar 2, 2026Updated 2 weeks ago
- Lattice light-sheet post-processing utility.☆30Mar 2, 2026Updated 2 weeks ago
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆46Mar 13, 2026Updated last week
- This python package allows the user to retrieve the wavefront aberrations in an optical system using the powerful tool of Phase Diversity…☆17Apr 5, 2023Updated 2 years ago
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Mar 2, 2019Updated 7 years ago
- Collection of literature, math, etc. for Structured Illumination Microscopy☆10Apr 23, 2019Updated 6 years ago
- Differentiable wave optics using JAX! Documentation can be found at https://chromatix.readthedocs.io☆155Nov 6, 2025Updated 4 months ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14May 13, 2020Updated 5 years ago
- OpenSIM matlab code☆57Apr 7, 2016Updated 9 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 9 months ago
- ☆23Mar 26, 2021Updated 4 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆31Sep 14, 2024Updated last year
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- ☆13Nov 9, 2015Updated 10 years ago
- Python samples for Micro-Manager: image acquisition and microscope control system☆22Sep 26, 2019Updated 6 years ago
- Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performan…☆84Jan 13, 2026Updated 2 months ago
- GPU accelerated 3D image deconvolution using CUDA☆39Jul 18, 2024Updated last year
- ☆10Nov 29, 2024Updated last year
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆75Mar 2, 2026Updated 2 weeks ago
- Free Analysis and Interactive Reconstruction for Structured Illumination Microscopy☆99Feb 16, 2026Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3☆99Jan 7, 2026Updated 2 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/iocbio☆16Aug 5, 2015Updated 10 years ago