TuragaLab / DECODE
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
☆99Updated last year
Alternatives and similar repositories for DECODE:
Users that are interested in DECODE are comparing it to the libraries listed below
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆75Updated 3 years ago
- Official implementation of the Optica 2018 paper "Deep-STORM: super-resolution single-molecule microscopy by deep learning"☆56Updated 4 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆39Updated 3 months ago
- Three-dimensional residual channel attention networks☆52Updated 2 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆77Updated 2 weeks ago
- Combined Repos from DAIN and Zooming SlowMo☆20Updated last year
- code of the registration and deconvolution project☆34Updated 3 years ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆27Updated 5 months ago
- STORM movie analysis code☆118Updated 11 months ago
- A deeplearning network based on Richardson-Lucy formula☆41Updated last year
- python functions for simulating optical transfer functions☆72Updated 10 months ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆49Updated 8 months ago
- ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging☆96Updated 6 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆38Updated last week
- ☆20Updated 10 months ago
- ☆68Updated last week
- MSSR Plugin☆13Updated 3 months ago
- Joint training of denoising and segmentation.☆70Updated last year
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Automatic Correction for sCMOS-related Noise☆17Updated 3 years ago
- Dataset EXploration & Processing☆31Updated last year
- SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising☆74Updated 5 months ago
- Zernike Optimized Localization Algorithm for 3D single molecule localizations☆18Updated 2 years ago
- GPU accelerated beam propagation tools for biological light tissue simulations☆35Updated 6 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 months ago
- Official Python implementation of the 'Sparse deconvolution'-v0.3.0☆51Updated last year
- A collection of useful python utilities from True North Intelligent Algorithms☆31Updated this week
- Things we use regularly☆29Updated 5 months ago
- Differentiable wave optics using JAX! Documentation can be found at https://chromatix.readthedocs.io☆84Updated 2 weeks ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆50Updated last year